CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1045..1738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_CAUCR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Caulobacter crescentus GN=sucC PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.684e-49
Identity = 94/141 (66.67%), Postives = 116/141 (82.27%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++EDP+E+ A+K DL YI LDGEIGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIM+CD+IA G++ A K+V L+VP+VVRLEGTNV+ G +I+ ESG+ +I A DL D
Sbjct:  246 SEEDPKEIEASKYDLAYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVKGILVNIFGGIMRCDIIAEGVIAAVKEVGLQVPLVVRLEGTNVELGKKIISESGLNVIAANDLSD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_CAUCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=sucC PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.684e-49
Identity = 94/141 (66.67%), Postives = 116/141 (82.27%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++EDP+E+ A+K DL YI LDGEIGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIM+CD+IA G++ A K+V L+VP+VVRLEGTNV+ G +I+ ESG+ +I A DL D
Sbjct:  246 SEEDPKEIEASKYDLAYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVKGILVNIFGGIMRCDIIAEGVIAAVKEVGLQVPLVVRLEGTNVELGKKIISESGLNVIAANDLSD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BARQU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella quintana GN=sucC PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.684e-49
Identity = 93/141 (65.96%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++EDP+E+ A+K DL Y+ L+G IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIM+CDVIA G+V A ++V LKVP+VVRLEGTN++QG  I+ +SG+ +I+A DLDD
Sbjct:  246 SEEDPKEIEASKHDLAYVALEGTIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPNVKGILVNIFGGIMRCDVIAEGVVAAVREVGLKVPLVVRLEGTNIEQGKAIISDSGLNVISASDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_VIBVY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio vulnificus (strain YJ016) GN=sucC PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.004e-48
Identity = 92/142 (64.79%), Postives = 114/142 (80.28%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AA+ +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A K+V + VPVVVRLEGTN D G ++L ESG+ +I AE L D
Sbjct:  235 PSQEDKREAHAAQWELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVSVPVVVRLEGTNADLGRKVLAESGLDIIAAESLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_VIBVU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio vulnificus GN=sucC PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.004e-48
Identity = 92/142 (64.79%), Postives = 114/142 (80.28%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AA+ +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A K+V + VPVVVRLEGTN D G ++L ESG+ +I AE L D
Sbjct:  235 PSQEDKREAHAAQWELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVSVPVVVRLEGTNADLGRKVLAESGLDIIAAESLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain TIE-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 94/141 (66.67%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G +PANFLDVGG AS+ +V  AFKI+T+D  V  IL+NIFGGIMKCDVIA G+V A K+V L VP+VVRLEGTNV+ G +I+K SG+ ++ A++LDD
Sbjct:  246 TEEDAKEIEASKYDLNYVTLDGTIGCMVNGAGLAMATMDIIKLYGMSPANFLDVGGGASKEKVTAAFKIITADPNVKGILINIFGGIMKCDVIAEGVVAAVKEVGLDVPLVVRLEGTNVEAGKKIIKHSGLNVLPADNLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris GN=sucC PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 94/141 (66.67%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G +PANFLDVGG AS+ +V  AFKI+T+D  V  IL+NIFGGIMKCDVIA G+V A K+V L VP+VVRLEGTNV+ G +I+K SG+ ++ A++LDD
Sbjct:  246 TEEDAKEIEASKYDLNYVTLDGTIGCMVNGAGLAMATMDIIKLYGMSPANFLDVGGGASKEKVTAAFKIITADPNVKGILINIFGGIMKCDVIAEGVVAAVKEVGLDVPLVVRLEGTNVEAGKKIIKHSGLNVLPADNLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHILW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 95/141 (67.38%), Postives = 114/141 (80.85%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANF DVGG A + +V  AFKI+T+D KV  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +IL ESG+ +  A+DLDD
Sbjct:  246 TEEDAKEIEASKWDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGKEPANFCDVGGGAGKEKVAAAFKIITADPKVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGKKILNESGLAITAADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHIL3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 95/141 (67.38%), Postives = 114/141 (80.85%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANF DVGG A + +V  AFKI+T+D KV  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +IL ESG+ +  A+DLDD
Sbjct:  246 TEEDAKEIEASKWDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGKEPANFCDVGGGAGKEKVAAAFKIITADPKVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGKKILNESGLAITAADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHIEC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 95/141 (67.38%), Postives = 114/141 (80.85%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANF DVGG A + +V  AFKI+T+D KV  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +IL ESG+ +  A+DLDD
Sbjct:  246 TEEDAKEIEASKWDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGKEPANFCDVGGGAGKEKVAAAFKIITADPKVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGKKILNESGLAITAADDLDD 386          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_CAUCR7.684e-4966.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAUCN7.684e-4966.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARQU7.684e-4965.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBVY1.004e-4864.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBVU1.004e-4864.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOPT1.311e-4866.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOPA1.311e-4866.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHILW1.311e-4867.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHIL31.311e-4867.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHIEC1.311e-4867.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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