CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHIE6 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium etli (strain CIAT 652) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 95/141 (67.38%), Postives = 114/141 (80.85%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANF DVGG A + +V  AFKI+T+D KV  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +IL ESG+ +  A+DLDD
Sbjct:  246 TEEDAKEIEASKWDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGKEPANFCDVGGGAGKEKVAAAFKIITADPKVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGKKILNESGLAITAADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOP2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain HaA2) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.712e-48
Identity = 93/141 (65.96%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G TPANFLDVGG AS+ +V  AFKI+T+D  V  IL+NIFGGIMKCD+IA G+V A K+V L VP+VVRLEGTNV+ G +I+K SG+ ++ A++LDD
Sbjct:  246 SEEDAKEIEASKYDLNYVTLDGTIGCMVNGAGLAMATMDIIKLYGMTPANFLDVGGGASKEKVTAAFKIITADPNVKGILINIFGGIMKCDIIAEGVVAAVKEVGLDVPLVVRLEGTNVEAGKKIIKHSGLNVLPADNLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_TOLAT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.236e-48
Identity = 94/141 (66.67%), Postives = 112/141 (79.43%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQEDPREV AA+ DLNY+ LDG IGCMVNGAGLAM TMDIIK HGG PANFLDVGG A++ +V EAFK++ SD KV A+LVNIFGGI++CD+IA G++ A  +V +KVPVVVRLEG N D G + L ESG+ +I A  L D
Sbjct:  236 TQEDPREVEAARWDLNYVALDGNIGCMVNGAGLAMGTMDIIKHHGGFPANFLDVGGGATKERVTEAFKLILSDSKVKAVLVNIFGGIVRCDLIADGVIGAVAEVGVKVPVVVRLEGNNADLGSKKLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEPF (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas fluorescens (strain Pf0-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.236e-48
Identity = 90/142 (63.38%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +K+PVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDPREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKIPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEFS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas fluorescens (strain SBW25) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.236e-48
Identity = 90/142 (63.38%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +K+PVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDPREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKIPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MARMM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Maricaulis maris (strain MCS10) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.236e-48
Identity = 94/141 (66.67%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG+IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A+  +V  AFKI+T+D  V  ILVNIFGGIM+CDVIA G+V A K V L+VP+VVRLEGTNV +G +I+ ESG+ +I A+DLDD
Sbjct:  246 TEEDEKEIEASKYDLAYVALDGDIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATTEKVTAAFKIITADPNVKGILVNIFGGIMRCDVIAEGVVTAVKDVGLQVPLVVRLEGTNVAKGKQIINESGLNVIAADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_COLP3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=sucC PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.236e-48
Identity = 92/142 (64.79%), Postives = 114/142 (80.28%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AA+ +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTN + G  +LK SG+ +I AE L D
Sbjct:  235 PSQEDEREAHAAQWELNYVALDGTVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGANKERVSEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGREVLKNSGLDIIAAESLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XANOR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas oryzae pv. oryzae GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 89/141 (63.12%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDETEVTASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XANOP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 89/141 (63.12%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDETEVTASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XANOM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 89/141 (63.12%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDETEVTASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RHIE61.311e-4867.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOP21.712e-4865.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_TOLAT2.236e-4866.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEPF2.236e-4863.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEFS2.236e-4863.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MARMM2.236e-4866.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_COLP32.236e-4864.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANOR2.920e-4863.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANOP2.920e-4863.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANOM2.920e-4863.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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