CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1045..1738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XANCP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 89/141 (63.12%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDETEVTASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XANCB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris (strain B100) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 89/141 (63.12%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDETEVTASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XANC8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 89/141 (63.12%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDETEVTASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XANC5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 89/141 (63.12%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDETEVTASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_XANAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas axonopodis pv. citri GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 89/141 (63.12%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED  EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDETEVTASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEU2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. syringae (strain B728a) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 90/142 (63.38%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +K+PVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDPREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDANVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKIPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSESM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. tomato GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 90/142 (63.38%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +K+PVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDPREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDTNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKIPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEF5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 90/142 (63.38%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +K+PVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDPREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDTNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKIPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSE14 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 90/142 (63.38%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +K+PVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDPREAHAAKFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDTNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKIPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_EXIS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 96/141 (68.09%), Postives = 113/141 (80.14%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDPREV A+K DLNYI LDG IGC+VNGAGLAMATMDIIK   G PANFLDVGG A++ +V EAFK++ SDE V  I VNIFGGIMKCDVIA GIV A K+V L++P+VVRLEGTNVD G +ILK+SG+ +  A  + D
Sbjct:  236 TEEDPREVEASKNDLNYIALDGNIGCLVNGAGLAMATMDIIKHFSGDPANFLDVGGGATKEKVTEAFKLILSDENVKGIFVNIFGGIMKCDVIAEGIVAATKEVGLELPLVVRLEGTNVDAGKQILKDSGLAITAATSMAD 376          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_XANCP2.920e-4863.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANCB2.920e-4863.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANC82.920e-4863.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANC52.920e-4863.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANAC2.920e-4863.12Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEU22.920e-4863.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSESM2.920e-4863.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEF52.920e-4863.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSE142.920e-4863.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EXIS22.920e-4868.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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