CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1045..1738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ANASK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Anaeromyxobacter sp. (strain K) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 97/142 (68.31%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P +EDP+E  A + DL+YI LDG+IGCMVNGAGLAMATMD+IKL GG PANFLDVGG A E +V  AFKI+ SD  V A+LVNIFGGIMKCDVIA+GIV AAKQV L +P+VVRLEGTNV+ G  IL  S + +I A+DL D
Sbjct:  235 PDEEDPKETQAKEYDLSYIALDGDIGCMVNGAGLAMATMDVIKLSGGQPANFLDVGGGADEDKVTAAFKIILSDPHVKAVLVNIFGGIMKCDVIANGIVAAAKQVGLSIPLVVRLEGTNVELGKDILAHSELKIIPADDLGD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ANAD2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 97/142 (68.31%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P +EDP+E  A + DL+YI LDG+IGCMVNGAGLAMATMD+IKL GG PANFLDVGG A E +V  AFKI+ SD  V A+LVNIFGGIMKCDVIA+GIV AAKQV L +P+VVRLEGTNV+ G  IL  S + +I A+DL D
Sbjct:  235 PDEEDPKETQAKEYDLSYIALDGDIGCMVNGAGLAMATMDVIKLSGGQPANFLDVGGGADEDKVTAAFKIILSDPHVKAVLVNIFGGIMKCDVIANGIVAAAKQVGLSIPLVVRLEGTNVELGKDILAHSELKIIPADDLGD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_AERS4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Aeromonas salmonicida (strain A449) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 92/142 (64.79%), Postives = 114/142 (80.28%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+ LHGG+PANFLDVGG A++ +V EAFKI+ SD KV A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEG N + G R L +SG+ +I A  L D
Sbjct:  235 PSQDDPREAHAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVNLHGGSPANFLDVGGGATKERVTEAFKIILSDSKVQAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGARKLADSGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_AERHH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.920e-48
Identity = 92/142 (64.79%), Postives = 114/142 (80.28%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+ LHGG+PANFLDVGG A++ +V EAFKI+ SD KV A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEG N + G R L +SG+ +I A  L D
Sbjct:  235 PSQDDPREAHAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVNLHGGSPANFLDVGGGATKERVTEAFKIILSDSKVQAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGARKLADSGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHEAM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.814e-48
Identity = 91/142 (64.08%), Postives = 114/142 (80.28%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTN + G ++L ESG+ +I A+ L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVSEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGAKVLAESGLDIIAAKSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_EXISA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.814e-48
Identity = 94/141 (66.67%), Postives = 114/141 (80.85%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDPREV A+K DL+YI LDG IGC+VNGAGLAMATMDIIK +G  PANFLDVGG A++ +V EAFK++ SD++V  I VNIFGGIMKCD+IA GIV A K++ L +P+VVRLEGTNVD G RIL ESG+ + TA  + D
Sbjct:  236 TEEDPREVEASKHDLSYIALDGNIGCLVNGAGLAMATMDIIKHYGAEPANFLDVGGGATKEKVTEAFKLILSDDQVKGIFVNIFGGIMKCDIIAEGIVAATKEIGLDLPLVVRLEGTNVDAGKRILDESGLAITTANSMAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_AGRVS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.814e-48
Identity = 94/141 (66.67%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++ +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G++ A K V L VP+VVRLEGTNV+ G +I+ ESG+ +I+A+DLDD
Sbjct:  246 TEEDAKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATKEKVTAAFKIITADPAVKGILVNIFGGIMKCDVIAEGVLAAVKDVGLTVPLVVRLEGTNVELGKKIINESGLNVISADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_TERTT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.981e-48
Identity = 89/142 (62.68%), Postives = 114/142 (80.28%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AAK +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +VVEAFKI+ SDE V A+L+NIFGGI++CD+IA G++ A ++V +K+PVV RLEG N + G ++L +SG+ +I A  L D
Sbjct:  235 PSQEDEREAHAAKWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGQPANFLDVGGGATKERVVEAFKIILSDESVSAVLINIFGGIVRCDLIAEGVIGAVEEVGVKIPVVCRLEGNNAELGAKVLADSGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PROMH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Proteus mirabilis (strain HI4320) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.981e-48
Identity = 91/142 (64.08%), Postives = 114/142 (80.28%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SDE V A+LVNIFGGI++CD+IA GI+ A ++V + VPVVVRLEG N + G + L +SG+ +I A+ L D
Sbjct:  235 PSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDENVSAVLVNIFGGIVRCDLIADGIIGAVEEVGVNVPVVVRLEGNNAELGTKKLADSGLNIIAAKSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_ANADE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=sucC PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.981e-48
Identity = 96/142 (67.61%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P +EDP+E  A + DL+YI LDG+IGCMVNGAGLAMATMD+IKL GG PANFLDVGG A E +V  AFKI+ SD  V A+LVNIFGGIMKCDVIA+GIV AAKQV L +P+VVRLEGTNV+ G  IL  S + +I A+DL +
Sbjct:  235 PDEEDPKETQAKEYDLSYIALDGDIGCMVNGAGLAMATMDVIKLSGGQPANFLDVGGGADEDKVTAAFKIILSDPHVKAVLVNIFGGIMKCDVIANGIVAAAKQVGLSIPLVVRLEGTNVELGKEILAHSELKIIPADDLGE 376          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ANASK2.920e-4868.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ANAD22.920e-4868.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AERS42.920e-4864.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AERHH2.920e-4864.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEAM3.814e-4864.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EXISA3.814e-4866.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AGRVS3.814e-4866.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_TERTT4.981e-4862.68Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PROMH4.981e-4864.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ANADE4.981e-4867.61Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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