CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1045..1738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SHELP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=sucC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 91/142 (64.08%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+D RE  AAK +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V ++VPVVVRLEGTN D G  +L  SG+ +I AE L D
Sbjct:  235 PSQDDAREAHAAKFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKIILSDANVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVEVPVVVRLEGTNADLGREVLANSGLDIIAAESLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHILO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium loti GN=sucC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 90/141 (63.83%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T D  V  IL+NIFGGIMKCD+IA G++ A K+V L+VP+VVRLEGTN + G +I+ +SG+ +++A+DLDD
Sbjct:  246 TEEDEKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITKDPAVKGILINIFGGIMKCDIIAEGVIAAVKEVGLEVPLVVRLEGTNAELGKKIINDSGLNVVSADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEPG (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain GB-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AA  +LNY+ L+G IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEG N + G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDPREAHAASFELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVTEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGAKVLAESGLNIIAATSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEHT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sucC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 91/142 (64.08%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AA  +LNY+ LDG +GCMVNGAGLAM TMDI+ LHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A K+V + VPVVVRLEGTN + G  +LK SG+ +I AE L D
Sbjct:  235 PSQEDSREAHAASFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVSEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVNVPVVVRLEGTNAELGREVLKNSGLDIIAAESLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_HAHCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hahella chejuensis (strain KCTC 2396) GN=sucC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 90/140 (64.29%), Postives = 114/140 (81.43%), Query Frame = -2
Query:  274 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDL 693
            P+QEDPRE  AAK +LNY+ L+G IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V EAFKI+ SD+ V A+LVNIFGGI++CD+IA GI+ A ++V +K+PVVVRLEG N + G + L +SG+ +I AE L
Sbjct:  235 PSQEDPREAHAAKWELNYVALEGNIGCMVNGAGLAMGTMDIVKLHGGAPANFLDVGGGATKERVTEAFKIILSDDNVKAVLVNIFGGIVRCDLIADGIIGAVEEVGVKIPVVVRLEGNNAELGAKKLADSGLNIIAAESL 374          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BRAJA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium japonicum GN=sucC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 93/141 (65.96%), Postives = 116/141 (82.27%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG+AS+ +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G+  A ++V L VP+VVRLEGTNV+ G +I+ ESG+ ++ A++LDD
Sbjct:  246 TEEDAKEIEASKYDLNYVTLDGNIGCMVNGAGLAMATMDIIKLYGMAPANFLDVGGSASKEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVTAAVREVGLSVPLVVRLEGTNVELGKKIILESGLNVVPADNLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BACCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=sucC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 94/140 (67.14%), Postives = 113/140 (80.71%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +EDP+E+ A+K DLNYI LDG IGCMVNGAGLAMATMDIIK + G PANFLDVGG A+  +V EAFKI+ SD+ V  I VNIFGGIMKCDVIA G+V A KQV L++P+VVRLEGTNV+ G +IL ESG+ ++ AE + D
Sbjct:  237 EEDPKEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTEAFKIILSDKNVKGIFVNIFGGIMKCDVIAEGVVEATKQVGLELPLVVRLEGTNVELGKKILNESGLNIVAAESMAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_AGRT5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=sucC PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANF DVGG A + +V  AFKI+T+D KV  ILVNIFGGIMKCDVIA G++ A K+V L+VP+VVRLEGTNV+ G ++L ESG+ +  A+DLDD
Sbjct:  246 TEEDAKEIEASKWDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGKEPANFCDVGGGAGKEKVAAAFKIITADPKVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLQVPLVVRLEGTNVELGKKLLNESGLAITAADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BACSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis GN=sucC PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 8.496e-48
Identity = 93/140 (66.43%), Postives = 113/140 (80.71%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAM+TMDIIK +GG PANFLDVGG A+  +V EAFKI+ SD+ V  I VNIFGGIMKCDVIA G+V A +QV L +P+VVRLEGTNVD G +IL ESG+ + +AE + D
Sbjct:  237 EEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMSTMDIIKHYGGEPANFLDVGGGATAEKVTEAFKIILSDQNVKGIFVNIFGGIMKCDVIAEGVVEATRQVGLTLPLVVRLEGTNVDLGKKILSESGLNITSAESMAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BACA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus amyloliquefaciens (strain FZB42) GN=sucC PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.496e-48
Identity = 93/140 (66.43%), Postives = 113/140 (80.71%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAM+TMDIIK +GG PANFLDVGG A+  +V EAFKI+ SD+ V  I VNIFGGIMKCDVIA G+V A +QV L +P+VVRLEGTNVD G +IL ESG+ + +AE + D
Sbjct:  237 EEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMSTMDIIKHYGGEPANFLDVGGGATAEKVTEAFKIILSDQNVKGIFVNIFGGIMKCDVIAEGVVEATRQVGLTLPLVVRLEGTNVDLGKKILNESGLNITSAESMAD 376          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_SHELP6.505e-4864.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHILO6.505e-4863.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEPG6.505e-4863.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEHT6.505e-4864.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAHCH6.505e-4864.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRAJA6.505e-4865.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACCN6.505e-4867.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AGRT56.505e-4865.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACSU8.496e-4866.43Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACA28.496e-4866.43Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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