CF832373

Overview
NameCF832373
Unique NameCF832373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: L2AM_DROSI (Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila simulans GN=amd PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.399e-27
Identity = 69/179 (38.55%), Postives = 100/179 (55.87%), Query Frame = 2
Query:  233 SSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFS--GNGGGVIQGTTCEAILCTLTAARDRVLNKIGR--------ENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            +S S    +GEML+SGF ++GF+WI SPA TELE +VMDWL + LK P  F  +  G GGGVIQG+  EA+L  + AAR++ +             E   +L+ Y SDQ++  ++KA  +  + ++   A        + L  D+L   I  DV  G IP+   AT+GTTG  A D ++
Sbjct:    1 TSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFLKPPAHFQHASDGPGGGVIQGSASEAVLVAVLAAREQAVASYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPA-----GEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIE 174          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCE1_RAT (Glutamate decarboxylase 1 OS=Rattus norvegicus GN=Gad1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 52/206 (25.24%), Postives = 97/206 (47.09%), Query Frame = 2
Query:  131 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            ++PES+E IL D +  +  G+     P +F    +   I G  GE L+S  N   F +  +P    +E I +  + +++          +G G+       + + ++ AAR +   ++   G   + KL+++ S+ +H +++KA   +G    N   IK  +     + P  L A+I    + G +PL++ AT GTT   A DP++
Sbjct:  159 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIGWSNK-----DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADLEAKILDAKQKGFVPLYVNATAGTTVYGAFDPIQ 356          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCE1_FELCA (Glutamate decarboxylase 1 OS=Felis catus GN=GAD1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 53/206 (25.73%), Postives = 98/206 (47.57%), Query Frame = 2
Query:  131 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            ++PES+E IL D +  +  G+     P +F    +   I G  GE L+S  N   F +  +P    +E I +  + +++        S +G G+       + + ++ AAR +   ++   G   + KL+++ S+ +H +++KA   +G    N   IK  +     + P  L A+I    + G +PL++ AT GTT   A DP++
Sbjct:  160 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKFFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADLEAKILEAKQKGYVPLYVNATAGTTVYGAFDPIQ 357          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCE1_CANFA (Glutamate decarboxylase 1 OS=Canis familiaris GN=GAD1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 53/206 (25.73%), Postives = 98/206 (47.57%), Query Frame = 2
Query:  131 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            ++PES+E IL D +  +  G+     P +F    +   I G  GE L+S  N   F +  +P    +E I +  + +++        S +G G+       + + ++ AAR +   ++   G   + KL+++ S+ +H +++KA   +G    N   IK  +     + P  L A+I    + G +PL++ AT GTT   A DP++
Sbjct:  160 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKFFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADLEAKILEAKQKGYVPLYVNATAGTTVYGAFDPIQ 357          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCE1_PIG (Glutamate decarboxylase 1 OS=Sus scrofa GN=GAD1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 53/206 (25.73%), Postives = 97/206 (47.09%), Query Frame = 2
Query:  131 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            ++PES+E IL D +  +  G+     P +F    +   I G  GE L+S  N   F +  +P    +E I +  + +++          +G G+       + + ++ AAR +   ++   G   + KL+++ S+ +H +++KA   +G    N   IK  +     + P  L A+I    + G IPL++ AT GTT   A DP++
Sbjct:  160 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSNK-----DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADLEAKILEAKQKGYIPLYVNATAGTTVYGAFDPIQ 357          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCE1_PANTR (Glutamate decarboxylase 1 OS=Pan troglodytes GN=GAD1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 52/206 (25.24%), Postives = 97/206 (47.09%), Query Frame = 2
Query:  131 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            ++PES+E IL D +  +  G+     P +F    +   I G  GE L+S  N   F +  +P    +E I +  + +++        S +G G+       + + ++ AAR +   ++   G   + KL+++ S+Q+H +++KA   +G    N   IK  +     + P    A+I    + G +P ++ AT GTT   A DP++
Sbjct:  160 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQ 357          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCE1_MOUSE (Glutamate decarboxylase 1 OS=Mus musculus GN=Gad1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 52/206 (25.24%), Postives = 97/206 (47.09%), Query Frame = 2
Query:  131 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            ++PES+E IL D +  +  G+     P +F    +   I G  GE L+S  N   F +  +P    +E I +  + +++          +G G+       + + ++ AAR +   ++   G   + KL+++ S+ +H +++KA   +G    N   IK  +     + P  L A+I    + G +PL++ AT GTT   A DP++
Sbjct:  159 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSNK-----DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADLEAKILDAKQKGYVPLYVNATAGTTVYGAFDPIQ 356          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCE1_PONAB (Glutamate decarboxylase 1 OS=Pongo abelii GN=GAD1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 52/206 (25.24%), Postives = 97/206 (47.09%), Query Frame = 2
Query:  131 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            ++PES+E IL D +  +  G+     P +F    +   I G  GE L+S  N   F +  +P    +E I +  + +++        S +G G+       + + ++TAAR +   ++   G   + KL+++ S+ +H +++KA   +G    N   IK  +     + P    A+I    + G +P ++ AT GTT   A DP++
Sbjct:  160 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSITAARYKYFLEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQ 357          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCE1_HUMAN (Glutamate decarboxylase 1 OS=Homo sapiens GN=GAD1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 52/206 (25.24%), Postives = 97/206 (47.09%), Query Frame = 2
Query:  131 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            ++PES+E IL D +  +  G+     P +F    +   I G  GE L+S  N   F +  +P    +E I +  + +++        S +G G+       + + ++ AAR +   ++   G   + KL+++ S+Q+H +++KA   +G    N   IK  +     + P    A+I    + G +P ++ AT GTT   A DP++
Sbjct:  160 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQ 357          
BLAST of CF832373 vs. ExPASy Swiss-Prot
Match: DCE1_BOVIN (Glutamate decarboxylase 1 OS=Bos taurus GN=GAD1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 52/206 (25.24%), Postives = 97/206 (47.09%), Query Frame = 2
Query:  131 NNPESMETILQDVQQHIVPGITHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNIVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKLIVYGSDQTHCALQKAAQIVGIDVKNFRAIKTTKSSSYGLSPDSLMAQINSDVEVGLIPLFLCATIGTTGITAVDPLK 739
            ++PES+E IL D +  +  G+     P +F    +   I G  GE L+S  N   F +  +P    +E I +  + +++        S +G G+       + + ++ AAR +   ++   G   + KL+++ S+ +H +++KA   +G    N   IK  +     + P  L  +I    + G +PL++ AT GTT   A DP++
Sbjct:  160 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARFKYFPEVKTKGMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADLETKILEAKQKGYVPLYVNATAGTTVYGAFDPIQ 357          
The following BLAST results are available for this feature:
BLAST of CF832373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
L2AM_DROSI5.399e-2738.55Alpha-methyldopa hypersensitive protein (Fragment)... [more]
DCE1_RAT2.435e-1125.24Glutamate decarboxylase 1 OS=Rattus norvegicus GN=... [more]
DCE1_FELCA2.435e-1125.73Glutamate decarboxylase 1 OS=Felis catus GN=GAD1 P... [more]
DCE1_CANFA2.435e-1125.73Glutamate decarboxylase 1 OS=Canis familiaris GN=G... [more]
DCE1_PIG3.180e-1125.73Glutamate decarboxylase 1 OS=Sus scrofa GN=GAD1 PE... [more]
DCE1_PANTR4.153e-1125.24Glutamate decarboxylase 1 OS=Pan troglodytes GN=GA... [more]
DCE1_MOUSE4.153e-1125.24Glutamate decarboxylase 1 OS=Mus musculus GN=Gad1 ... [more]
DCE1_PONAB5.424e-1125.24Glutamate decarboxylase 1 OS=Pongo abelii GN=GAD1 ... [more]
DCE1_HUMAN5.424e-1125.24Glutamate decarboxylase 1 OS=Homo sapiens GN=GAD1 ... [more]
DCE1_BOVIN7.084e-1125.24Glutamate decarboxylase 1 OS=Bos taurus GN=GAD1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832373 ID=CF832373; Name=CF832373; organism=Citrus sinensis; type=EST; length=739bp
GGAATTCAGGAGGCAAGGCCACATGATCATTGACTTCATTGCTGATTACT
ACAAAAATGTCGAGAAATACCCGGTTCGAAGCCAAGTGGAACCGGGTTAT
CTCCAAAAAGTGTTGCCAGAATCCGCCCCTAACAATCCTGAGTCTATGGA
GACTATCCTCCAGGACGTACAACAACACATTGTCCCAGGTATAACGCACT
GGCAAAGTCCCAACTACTTCGCTTACTTTCCCTCAAGTGGTAGCATCGCC
GGATTTCTCGGTGAAATGCTGAGTTCTGGATTTAATATTGTGGGATTCAA
CTGGATCTCATCACCGGCTGCAACTGAGCTTGAGAATATAGTTATGGATT
GGCTTGGCCAAATGCTGAAGCTTCCCAAGTCTTTCCTTTTCTCGGGCAAT
GGTGGTGGAGTCATACAAGGAACTACATGTGAGGCCATTCTGTGCACACT
AACGGCAGCGAGAGATCGAGTTCTGAACAAGATTGGAAGAGAAAACATAT
CCAAGCTTATTGTATATGGATCTGATCAAACTCATTGTGCCCTCCAGAAA
GCTGCTCAGATTGTCGGAATCGATGTCAAGAATTTCCGAGCTATTAAGAC
AACAAAGTCTTCATCCTATGGGCTGTCGCCAGACTCACTGATGGCACAAA
TCAACTCGGATGTAGAAGTTGGACTGATCCCATTATTTCTATGTGCCACA
ATCGGGACGACTGGCATAACTGCTGTTGATCCCTTAAAG
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