CF832378

Overview
NameCF832378
Unique NameCF832378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832378_ssr210 microsatellite CF832378_ssr210:210..221. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832378_ssr235 microsatellite CF832378_ssr235:235..246. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: CF115_BOVIN (UPF0727 protein C6orf115 homolog OS=Bos taurus PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.330e-19
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            I RLG    DG   V FGVLF DD+CAN+FEALVGTL+AAK+RK +TY GELLLQGVHD+V+I L
Sbjct:   14 IHRLGSKNADGKLSVKFGVLFQDDKCANLFEALVGTLKAAKRRKIITYSGELLLQGVHDDVDIIL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: CF115_COTCO (UPF0727 protein C6orf115 homolog OS=Coturnix coturnix PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            I+RLG    DG   V FGVLF D++CAN+FEALVGTL+AAK+RK +TY GELLLQGVHDNV+I L
Sbjct:   14 IRRLGTKNADGQVSVKFGVLFADEKCANLFEALVGTLKAAKRRKIVTYQGELLLQGVHDNVDIVL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: CF115_HUMAN (UPF0727 protein C6orf115 OS=Homo sapiens GN=C6orf115 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.974e-19
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            I RLG    DG   V FGVLF DD+CAN+FEALVGTL+AAK+RK +TY GELLLQGVHD+V+I L
Sbjct:   14 IHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIVTYPGELLLQGVHDDVDIIL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: U727_NEMVE (UPF0727 protein v1g158749 OS=Nematostella vectensis GN=v1g158749 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.495e-18
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            ++RLG+   D    V FGVLF+DDRCANIFEALVGTL+AAK++K + YD ELLLQGVHD+V+I L
Sbjct:   14 LKRLGQPNSDDKIVVKFGVLFNDDRCANIFEALVGTLKAAKRKKIVHYDSELLLQGVHDHVDIVL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: U727_DICDI (UPF0727 protein OS=Dictyostelium discoideum GN=DDB_G0272861 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.372e-16
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            I++LG    DG Y V +GVLF+DD  AN FEALVGTL+AAKKR  +T+ GE+LLQ VHDNV++ L
Sbjct:   14 IKKLGTKGADGKYSVKYGVLFNDDDVANFFEALVGTLKAAKKRGIITFQGEILLQRVHDNVDVIL 78          
The following BLAST results are available for this feature:
BLAST of CF832378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CF115_BOVIN2.330e-1969.23UPF0727 protein C6orf115 homolog OS=Bos taurus PE=... [more]
CF115_COTCO3.043e-1969.23UPF0727 protein C6orf115 homolog OS=Coturnix cotur... [more]
CF115_HUMAN3.974e-1969.23UPF0727 protein C6orf115 OS=Homo sapiens GN=C6orf1... [more]
U727_NEMVE7.495e-1866.15UPF0727 protein v1g158749 OS=Nematostella vectensi... [more]
U727_DICDI5.372e-1661.54UPF0727 protein OS=Dictyostelium discoideum GN=DDB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832378 ID=CF832378; Name=CF832378; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTGCGTAGAGAATTGACCATATCCTCTTTTCCTCTC
TTTTGCATAAGCTCTTTTAGAGAAATGATTTAAAAGGCAAGCCAAGGTTC
AAATGTAAGACAATCACAGTAGACACACAACACAATTAATGAAGATAAAG
GGATTTATGGAAGATCTGGTAAAAGCAATACCAAATATTTGGCAGTTAAC
TAGGACTCAGCTGCTGCTGCTACCGCCAATGGTTGTGGTGGTGGTGGTTT
GAGGGTAATTTCAACATTATCGTGGACTCCTTGTAAGAGAAGCTCACCAT
CATATGTAAGAAATTTACGTTTCTTTGCAGCTCTCAGTGTCCCAACAAGT
GCCTCAAATATGTTCGCGCACCTATCATCATGAAATAGCACACCAAATGT
AACCTTGTAAGAGCCATCAGGTTGGATCTTGCCAAGTCGTTGGATTTCCT
CCTTGAGTCGCTCTACCTCTTCTTCCACATTCATGGCTTCTTCTTTTGTC
TTTTATCTTTTTTCAGTCTTTTATTTCCCCCTTTTTCTCCACTCACTTTC
T
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