CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:351..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_STAAS (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=pdhD PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 90/211 (42.65%), Postives = 129/211 (61.14%), Query Frame = -3
Query:  139 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 771
            A GE+  +EAD VLV+ GR P T  LGL+++GV+    G + V+++  T+I  +YAIGD++PG  LAHKA  +     E + G+   VDY  +P V +T PE+A+VG +E Q KE G+  +  KFP+ AN RA ++DD  G VK++  KE D ++G  ++   A ++I E  LAI    ++EDIA   HAHPT+ E   EAA      PIH
Sbjct:  256 AKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDKQSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELATVGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIH 466          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_STAAR (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=pdhD PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 90/211 (42.65%), Postives = 129/211 (61.14%), Query Frame = -3
Query:  139 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 771
            A GE+  +EAD VLV+ GR P T  LGL+++GV+    G + V+++  T+I  +YAIGD++PG  LAHKA  +     E + G+   VDY  +P V +T PE+A+VG +E Q KE G+  +  KFP+ AN RA ++DD  G VK++  KE D ++G  ++   A ++I E  LAI    ++EDIA   HAHPT+ E   EAA      PIH
Sbjct:  256 AKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDKQSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELATVGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIH 466          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_STAAN (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain N315) GN=pdhD PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 90/211 (42.65%), Postives = 129/211 (61.14%), Query Frame = -3
Query:  139 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 771
            A GE+  +EAD VLV+ GR P T  LGL+++GV+    G + V+++  T+I  +YAIGD++PG  LAHKA  +     E + G+   VDY  +P V +T PE+A+VG +E Q KE G+  +  KFP+ AN RA ++DD  G VK++  KE D ++G  ++   A ++I E  LAI    ++EDIA   HAHPT+ E   EAA      PIH
Sbjct:  256 AKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDKQSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELATVGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIH 466          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_STAAM (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhD PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 90/211 (42.65%), Postives = 129/211 (61.14%), Query Frame = -3
Query:  139 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 771
            A GE+  +EAD VLV+ GR P T  LGL+++GV+    G + V+++  T+I  +YAIGD++PG  LAHKA  +     E + G+   VDY  +P V +T PE+A+VG +E Q KE G+  +  KFP+ AN RA ++DD  G VK++  KE D ++G  ++   A ++I E  LAI    ++EDIA   HAHPT+ E   EAA      PIH
Sbjct:  256 AKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDKQSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELATVGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIH 466          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_STAAC (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain COL) GN=pdhD PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 90/211 (42.65%), Postives = 129/211 (61.14%), Query Frame = -3
Query:  139 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 771
            A GE+  +EAD VLV+ GR P T  LGL+++GV+    G + V+++  T+I  +YAIGD++PG  LAHKA  +     E + G+   VDY  +P V +T PE+A+VG +E Q KE G+  +  KFP+ AN RA ++DD  G VK++  KE D ++G  ++   A ++I E  LAI    ++EDIA   HAHPT+ E   EAA      PIH
Sbjct:  256 AKGEEKTIEADYVLVTVGRRPNTDELGLEELGVKFADRGLLEVDKQSRTSISNIYAIGDIVPGLPLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVCFTEPELATVGYSEAQAKEEGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKAIGYPIH 466          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_HALSA (Dihydrolipoyl dehydrogenase OS=Halobacterium salinarium GN=lpdA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.730e-43
Identity = 89/209 (42.58%), Postives = 125/209 (59.81%), Query Frame = -3
Query:  139 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 765
            GE+T  E + VLV+ GR P T  L LD +G+E +  GR+  +    T++  V+AIGDV PGPMLAHKA ++G    E +AG+   +DY  VP  V+T PE+ +VG TE+     G +  VG FPF A+ RA      +G V+++A++E+  +LG  I+ P A EL+ E  LAI   A+ ED+A   H HPT+SEA  EAA       +H
Sbjct:  262 GEETEFETEKVLVAVGRQPVTDTLNLDAVGLEPNDDGRLETDHEARTDVENVFAIGDVAPGPMLAHKASKEGEVAAEVIAGEPAALDYQAVPAAVFTDPEIGTVGLTEDDAAAQGFDPVVGTFPFNASGRALTTGHDDGFVEVVADEESGFLLGAQIVGPEASELVAELGLAIEMGATLEDVASTIHTHPTLSEATMEAAEHALGHAVH 470          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH3_HALMA (Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marismortui GN=lpdA3 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.249e-42
Identity = 90/214 (42.06%), Postives = 122/214 (57.01%), Query Frame = -3
Query:  139 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 780
            + AA      L AD +LV+ GR P T  L +D  GVET+  G IP +    TN   ++A+GDV   PMLAHK  ++G    E +AG+   VDY  +P  V+T PE+ +VG TE +    G+    G+F F A+ RA   + AEG V+I+A KET++++G  I+ P A ELI E    I   A  EDI    H HPT+SEA+ EAA    +K IH
Sbjct:  261 DEAAHDSDIELTADRILVAVGRRPVTDTLSIDDAGVETNAQGFIPTDSTCRTNKEHIFAVGDVAGEPMLAHKGSKEGEVAAEVIAGEPAAVDYQALPAAVFTDPEIGTVGLTENEAANKGMTPVTGEFQFQASGRALTANRAEGFVRIIATKETERVIGAQIVGPEASELIAEIAAMIEMGAKLEDIGSTVHTHPTLSEAIMEAAQNAREKAIH 474          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH2_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=bfmBC PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.450e-41
Identity = 91/210 (43.33%), Postives = 129/210 (61.43%), Query Frame = -3
Query:  139 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 765
            GE     A+ +LVS GR     G+GL+   + T+  G I VNE   T    +YAIGDVI G  LAH A  +G+  VE  AG + H +D   VP  +Y+ PE ASVG TE++ K  G   ++GKFPF+A  +A    +++G VKI+A+++TD ILGVH++ P+  ++I EA LA   DA+  ++ +  H HPT+SEA+ EAA+A   K IH
Sbjct:  265 GETVTYSAEKMLVSIGRQANIEGIGLENTDIVTEN-GMISVNESCQTKESHIYAIGDVIGGLQLAHVASHEGIIAVEHFAGLNPHPLDPTLVPKCIYSSPEAASVGLTEDEAKANGHNVKIGKFPFMAIGKALVYGESDGFVKIVADRDTDDILGVHMIGPHVTDMISEAGLAKVLDATPWEVGQTIHPHPTLSEAIGEAALAADGKAIH 473          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_VIBCH (Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=lpd PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.234e-40
Identity = 84/192 (43.75%), Postives = 121/192 (63.02%), Query Frame = -3
Query:  166 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 741
            D VLV+ GR P    L  +K G+E D+ G I V+++  TN+P ++AIGD++  PMLAHK   +G    E ++GK  + D   +P + YT PEVA VGKTE++ K  G+ Y V  FP+ A+ RA A D A+G+ K++ +KET +++G  I+  N GEL+ E  LAI     +EDIA   HAHPT+ E++  AA
Sbjct:  265 DAVLVAIGRVPNGKLLDAEKAGLEVDERGFIRVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVISGKKHYFDPKVIPSIAYTEPEVAWVGKTEKEAKAEGINYEVATFPWAASGRAIASDCADGMTKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_HAEIN (Dihydrolipoyl dehydrogenase OS=Haemophilus influenzae GN=lpdA PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.234e-40
Identity = 85/192 (44.27%), Postives = 121/192 (63.02%), Query Frame = -3
Query:  166 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 741
            D VLV+ GR P    +   K GVE D  G I V+++  TN+P +YAIGD++  PMLAHK   +G    E +AG+  + D   +P + YT PEVA VGKTE++ K+ G+ Y V KFP+ A+ RA A + +EG+ K++ +K+T ++LG  I+  N GEL+ E  LAI     +EDIA   HAHPT+ E++  AA
Sbjct:  265 DAVLVAIGRVPNGKLIDAGKAGVEVDDRGFIHVDKQMRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVIAGQKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASECSEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAA 456          
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
DLDH_STAAS1.558e-4342.65Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAR1.558e-4342.65Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAN1.558e-4342.65Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAM1.558e-4342.65Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAC1.558e-4342.65Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_HALSA7.730e-4342.58Dihydrolipoyl dehydrogenase OS=Halobacterium salin... [more]
DLDH3_HALMA2.249e-4242.06Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marism... [more]
DLDH2_BACSU9.450e-4143.33Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH_VIBCH1.234e-4043.75Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=... [more]
DLDH_HAEIN1.234e-4044.27Dihydrolipoyl dehydrogenase OS=Haemophilus influen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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