CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:351..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_SHIFL (Dihydrolipoyl dehydrogenase OS=Shigella flexneri GN=lpdA PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.749e-40
Identity = 84/192 (43.75%), Postives = 118/192 (61.46%), Query Frame = -3
Query:  166 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 741
            D VLV+ GR P    L   K GVE D  G I V+++  TN+P ++AIGD++  PMLAHK   +G    E +AGK  + D   +P + YT PEVA VG TE++ KE G+ Y    FP+ A+ RA A D A+G+ K++ +KE+ +++G  I+  N GEL+ E  LAI     +EDIA   HAHPT+ E++  AA
Sbjct:  265 DAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_ECOLI (Dihydrolipoyl dehydrogenase OS=Escherichia coli (strain K12) GN=lpdA PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.749e-40
Identity = 84/192 (43.75%), Postives = 118/192 (61.46%), Query Frame = -3
Query:  166 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 741
            D VLV+ GR P    L   K GVE D  G I V+++  TN+P ++AIGD++  PMLAHK   +G    E +AGK  + D   +P + YT PEVA VG TE++ KE G+ Y    FP+ A+ RA A D A+G+ K++ +KE+ +++G  I+  N GEL+ E  LAI     +EDIA   HAHPT+ E++  AA
Sbjct:  265 DAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_ECOL6 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O6 GN=lpdA PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.749e-40
Identity = 84/192 (43.75%), Postives = 118/192 (61.46%), Query Frame = -3
Query:  166 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 741
            D VLV+ GR P    L   K GVE D  G I V+++  TN+P ++AIGD++  PMLAHK   +G    E +AGK  + D   +P + YT PEVA VG TE++ KE G+ Y    FP+ A+ RA A D A+G+ K++ +KE+ +++G  I+  N GEL+ E  LAI     +EDIA   HAHPT+ E++  AA
Sbjct:  265 DAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_ECO57 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O157:H7 GN=lpdA PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.749e-40
Identity = 84/192 (43.75%), Postives = 118/192 (61.46%), Query Frame = -3
Query:  166 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 741
            D VLV+ GR P    L   K GVE D  G I V+++  TN+P ++AIGD++  PMLAHK   +G    E +AGK  + D   +P + YT PEVA VG TE++ KE G+ Y    FP+ A+ RA A D A+G+ K++ +KE+ +++G  I+  N GEL+ E  LAI     +EDIA   HAHPT+ E++  AA
Sbjct:  265 DAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_VIBPA (Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyticus GN=lpd PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.690e-40
Identity = 86/203 (42.36%), Postives = 127/203 (62.56%), Query Frame = -3
Query:  166 GEKTILEA---DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 765
            G+K   EA   D VLV+ GR P    +  +K G+E D+ G I V+++  TN+P ++AIGD++  PMLAHK   +G    E ++GK  + D   +P + YT PEVA VGKTE++ K  G++Y V  FP+ A+ RA A D ++G+ K++ +KET +++G  I+  N GEL+ E  LAI     +EDIA   HAHPT+ E++  AA
Sbjct:  254 GKKAPAEAERYDAVLVAIGRVPNGKLIDGEKAGLEIDERGFINVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVISGKKHYFDPKVIPSIAYTEPEVAWVGKTEKEAKAEGIKYEVATFPWAASGRAIASDCSDGMTKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAA 456          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAI (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=lpdA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.365e-39
Identity = 84/188 (44.68%), Postives = 119/188 (63.30%), Query Frame = -3
Query:  178 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 741
            D VLV+ GRTP    LGLD+IG++ +  G I VN +  TNIP +YAIGDV   PMLAHK   +G    E ++GK+ + +   +P + YT PE+A VG +E++ K+  + Y V  FP+ A+ RA A + + G  K++  K+ +KI+G  I+  NAGELI E  LAI     +EDIA   HAHPT+SE++
Sbjct:  265 DAVLVAIGRTPNIDSLGLDRIGLKINNFGFIQVNNQLKTNIPHIYAIGDVAGTPMLAHKGVHEGHIAAEVISGKNHYFEPKVIPSIAYTDPEIAWVGLSEKEAKQENINYEVAIFPWNASGRAIASNCSIGKTKLIFNKQNNKIIGGSIVGSNAGELIGEVGLAIEMGCDAEDIALTIHAHPTLSESI 452          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH2_HALMA (Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marismortui GN=lpdA2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.782e-39
Identity = 84/206 (40.78%), Postives = 120/206 (58.25%), Query Frame = -3
Query:  139 TILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 756
            T   A+  LV+ GR P T  L LD I ++TD+ G IP +++  T    V+A+GDV   PMLAHKA  +G       AG+    D+  +P  V+T PE+A+VG TE + +  G E  +G+ P  AN RA  +++ EG V+++A+ + + +LG  I+ P A ELI E  L I   A  EDIA   H HPT+SEA+ EAA A   + +H
Sbjct:  265 TEYNAEKCLVAVGREPVTDTLALDNIDLQTDENGVIPTDDQCRTAFESVFAVGDVAGEPMLAHKAMAEGEVAARAAAGEPAAFDHQAIPAAVFTDPEIATVGMTESEAEAAGFEPVIGQMPVRANGRALTVNEKEGFVRVVADADEEFLLGAQIVGPEASELIAELGLGIEMGARLEDIAGTIHTHPTLSEAVHEAAAAARGEAVH 470          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_HALVO (Dihydrolipoyl dehydrogenase OS=Halobacterium volcanii GN=lpdA PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.328e-39
Identity = 84/210 (40.00%), Postives = 126/210 (60.00%), Query Frame = -3
Query:  139 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 765
            GE+    AD VLV+ GR+P T  + ++  G+E D  G + V++R  T++  +YA+GDV+   PMLAH A ++G+   E +AG+    D   VP  V+T PE+ +VG TE   +E G    VG+ PF A+ RA   + A+G V+++A++E+  +LG  I+ P A ELI E   AI   A+ ED+A   H HPT++EA+ EAA     + IH
Sbjct:  262 GEENEYRADKVLVAVGRSPVTDTMDIENAGLEADDRGFLSVDDRRRTDVEHIYAVGDVVEDTPMLAHVASKEGIVAAEHVAGEPVAFDSQAVPAAVFTDPEIGTVGMTEADAEEAGFTPVVGQMPFRASGRALTTNHADGFVRVVADEESGFVLGAQIVGPEASELIAELAFAIEMGATLEDVASTIHTHPTLAEAVMEAAENALGQAIH 471          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_CHLMU (Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum GN=lpdA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.970e-39
Identity = 82/206 (39.81%), Postives = 120/206 (58.25%), Query Frame = -3
Query:  136 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 753
            I E D VLVS GR   T  +GLDK GV  D+ G IP +    TN+P +YAIGD+     LAH A   G+     +AG    +DY  VP V++T PEVASVG +    ++ G+  +V KFPF A  +A A+ +++G   I++ + + +ILG +++ P+A  LI E  LAI  + +   I    HAHPT++E   E+A+   D P+H+
Sbjct:  255 IEEYDYVLVSIGRRLNTENIGLDKAGVICDERGVIPTDSTMRTNVPNIYAIGDITGKWQLAHVASHQGIVAARNIAGHKDEIDYSAVPSVIFTFPEVASVGLSPTSAQQQGIPVKVTKFPFRAIGKAVAMGESDGFAAIISHETSQQILGAYVIGPHASSLISEITLAIRNELTLPCIYETIHAHPTLAEVWAESALLAVDTPLHM 460          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_BUCBP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=lpdA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.970e-38
Identity = 82/192 (42.71%), Postives = 120/192 (62.50%), Query Frame = -3
Query:  166 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 741
            D++LV+ GR P T  L + K+G++TD  G I VNE+F TNIP +YAIGDVI  PMLAHK   +G    E ++GK  + +   +P V YT PE+A VG TE + ++  + Y V    +    RA +   +EG+ K++ +K+T+KI+G  I+  NAGEL+ E  LAI     +ED+A   HAHPT+ E++  +A
Sbjct:  267 DIILVAIGRVPNTDMLDISKVGLKTDNNGFIKVNEQFCTNIPNIYAIGDVIGQPMLAHKGTHEGHIVAEVISGKKHYFNPFVIPCVSYTEPEIAWVGITENEARKNNINYEVSSVLWNTLGRAVSSQCSEGVTKLIFDKKTNKIIGGCIVGSNAGELLGEISLAIEMGCDAEDLALTIHAHPTLYESINLSA 458          
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
DLDH_SHIFL2.749e-4043.75Dihydrolipoyl dehydrogenase OS=Shigella flexneri G... [more]
DLDH_ECOLI2.749e-4043.75Dihydrolipoyl dehydrogenase OS=Escherichia coli (s... [more]
DLDH_ECOL62.749e-4043.75Dihydrolipoyl dehydrogenase OS=Escherichia coli O6... [more]
DLDH_ECO572.749e-4043.75Dihydrolipoyl dehydrogenase OS=Escherichia coli O1... [more]
DLDH_VIBPA4.690e-4042.36Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyt... [more]
DLDH_BUCAI1.365e-3944.68Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH2_HALMA1.782e-3940.78Dihydrolipoyl dehydrogenase 2 OS=Haloarcula marism... [more]
DLDH_HALVO2.328e-3940.00Dihydrolipoyl dehydrogenase OS=Halobacterium volca... [more]
DLDH_CHLMU3.970e-3939.81Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum... [more]
DLDH_BUCBP1.970e-3842.71Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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