CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:351..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: MERA_STAES (Mercuric reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=merA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 78/209 (37.32%), Postives = 118/209 (56.46%), Query Frame = -3
Query:  142 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAE-EDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPI 765
            G++ ++EAD VLV+ GR P T  L L+  GV+T K G +  NE   T+   +YA GDV  GP   + A  E G+     L      +D   VPGV +T+P +A+VG TE+Q KE G + +    P  A  RA    +  G+ K++   +T K++G HI++ NAG++I+ A LA+ +  + ED+      + TM+E LK AA+ T DK +
Sbjct:  332 GQEQVIEADQVLVATGRKPNTETLNLESAGVKTGKKGEVLTNEYLQTSNNRIYAAGDVTLGPQFVYVAAYEGGIVANNALGLAKRKIDLRFVPGVTFTNPSIATVGLTEQQAKEKGYDVKTSVLPLDAVPRALVNHETTGVYKLVVNAQTQKLIGAHIVSENAGDVIYAATLAVQFGLTIEDLTDSFAPYLTMAEGLKLAAL-TFDKDV 539          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: MERA_STAAU (Mercuric reductase OS=Staphylococcus aureus GN=merA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 78/209 (37.32%), Postives = 118/209 (56.46%), Query Frame = -3
Query:  142 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAE-EDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPI 765
            G++ ++EAD VLV+ GR P T  L L+  GV+T K G +  NE   T+   +YA GDV  GP   + A  E G+     L      +D   VPGV +T+P +A+VG TE+Q KE G + +    P  A  RA    +  G+ K++   +T K++G HI++ NAG++I+ A LA+ +  + ED+      + TM+E LK AA+ T DK +
Sbjct:  332 GQEQVIEADQVLVATGRKPNTETLNLESAGVKTGKKGEVLTNEYLQTSNNRIYAAGDVTLGPQFVYVAAYEGGIVANNALGLAKRKIDLRFVPGVTFTNPSIATVGLTEQQAKEKGYDVKTSVLPLDAVPRALVNHETTGVYKLVVNAQTQKLIGAHIVSENAGDVIYAATLAVQFGLTIEDLTDSFAPYLTMAEGLKLAAL-TFDKDV 539          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_MYCTU (Dihydrolipoyl dehydrogenase OS=Mycobacterium tuberculosis GN=lpd PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 78/195 (40.00%), Postives = 111/195 (56.92%), Query Frame = -3
Query:  172 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 750
            L+A+ VL + G  P   G GLDK GV       I V++   TN+  +YAIGDV     LAH AE  GV   E +AG       D+  +P   +  P VAS G TE+Q +  G +  V KFPF AN++A  + D  G VK++A+ +  ++LG H++  +  EL+ E  LA  +D ++ ++AR  H HPTMSEAL+E
Sbjct:  258 LKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQE 452          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_MYCBO (Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis GN=lpd PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 78/195 (40.00%), Postives = 111/195 (56.92%), Query Frame = -3
Query:  172 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 750
            L+A+ VL + G  P   G GLDK GV       I V++   TN+  +YAIGDV     LAH AE  GV   E +AG       D+  +P   +  P VAS G TE+Q +  G +  V KFPF AN++A  + D  G VK++A+ +  ++LG H++  +  EL+ E  LA  +D ++ ++AR  H HPTMSEAL+E
Sbjct:  258 LKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQE 452          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEPU (Dihydrolipoyl dehydrogenase OS=Pseudomonas putida GN=lpdV PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 79/210 (37.62%), Postives = 117/210 (55.71%), Query Frame = -3
Query:  136 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 765
            G +  LEAD VLV+ GR P T G  L+ + ++ +    I ++ER  T++  V+AIGDV   PMLAH+A   G    E +AGK    +   +  V +T PEV  VGKT EQ  + G++  V +FPF AN RA +++   G V+++A ++   ILG   +     EL      ++   A  ED+A   HAHPT+ EA++EAA+      +HI
Sbjct:  251 GGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAA-IAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH_ZYMMO (Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis GN=lpd PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.368e-31
Identity = 75/213 (35.21%), Postives = 118/213 (55.40%), Query Frame = -3
Query:  139 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG-KHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 771
            A G+ T       +V+ G       +GLDK+G++ D+ G I V+    TN+  V+AIGDV   P LAHKA   GV   E +AG  H H ++   +PG  Y  P+VASVG TEE+ ++ G   ++G FPF+AN +A A    +G VK + + ++  +LG H++     E+I    +A   + +  +I      HPT+SEA+ E+ +A + + +H
Sbjct:  254 ADGKVTKERFSHAIVAIGVVANVENIGLDKLGIKLDR-GFIAVDGFGRTNVDHVWAIGDVAGAPCLAHKASHQGVIAAEAIAGCDHVHPLNTQNIPGCTYARPQVASVGLTEEKARQQGYNVKIGNFPFIANGKAIAQGATDGFVKTVFDADSGALLGAHMVGAEVTEMIQGYTVARTLETTEAEIMETIFPHPTLSEAMHESVLAAYGRALH 465          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEAE (Dihydrolipoyl dehydrogenase OS=Pseudomonas aeruginosa GN=lpdV PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.368e-31
Identity = 77/211 (36.49%), Postives = 117/211 (55.45%), Query Frame = -3
Query:  136 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR-IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 765
            GE+  + AD VLV+ GR P + G  L+ +G+  D  GR + V+++  T++  V+AIGD+   PMLAH+A   G    E +AGK        +P V +T PEV   G + EQ K+ G++  V  FPF AN RA  ++  EG V+++A ++   ++G   +     EL      ++   A  EDIA   HAHPT+ EA++EAA+      +HI
Sbjct:  256 GEEREIAADQVLVAVGRKPRSEGWNLESLGL--DMNGRAVKVDDQCRTSMRNVWAIGDLAGEPMLAHRAMAQGEMVAELIAGKRRQFAPVAIPAVCFTDPEVVVAGLSPEQAKDAGLDCLVASFPFAANGRAMTLEANEGFVRVVARRDNHLVVGWQAVGKAVSELSTAFAQSLEMGARLEDIAGTIHAHPTLGEAVQEAALRALGHALHI 464          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_YERE8 (Soluble pyridine nucleotide transhydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=sthA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.865e-29
Identity = 75/200 (37.50%), Postives = 117/200 (58.50%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T+GLGL+KIG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+ +  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  260 VKADCLLYANGRTGNTSGLGLEKIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANTHLIEDIPTGIYTIPEISSVGKTEQDLTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_SALTY (Soluble pyridine nucleotide transhydrogenase OS=Salmonella typhimurium GN=sthA PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.298e-29
Identity = 76/200 (38.00%), Postives = 116/200 (58.00%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_SALTI (Soluble pyridine nucleotide transhydrogenase OS=Salmonella typhi GN=sthA PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.298e-29
Identity = 76/200 (38.00%), Postives = 116/200 (58.00%), Query Frame = -3
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L+ IG+ETD  G++ VN  + T +P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459          
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
MERA_STAES1.616e-3237.32Mercuric reductase OS=Staphylococcus epidermidis (... [more]
MERA_STAAU1.616e-3237.32Mercuric reductase OS=Staphylococcus aureus GN=mer... [more]
DLDH_MYCTU1.616e-3240.00Dihydrolipoyl dehydrogenase OS=Mycobacterium tuber... [more]
DLDH_MYCBO1.616e-3240.00Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis... [more]
DLDH1_PSEPU1.616e-3237.62Dihydrolipoyl dehydrogenase OS=Pseudomonas putida ... [more]
DLDH_ZYMMO1.368e-3135.21Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis G... [more]
DLDH1_PSEAE1.368e-3136.49Dihydrolipoyl dehydrogenase OS=Pseudomonas aerugin... [more]
STHA_YERE84.865e-2937.50Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_SALTY8.298e-2938.00Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]
STHA_SALTI8.298e-2938.00Soluble pyridine nucleotide transhydrogenase OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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