CF832401

Overview
NameCF832401
Unique NameCF832401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:351..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_YERPS (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis GN=sthA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  260 VKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_YERPP (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis (strain Pestoides F) GN=sthA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  260 VKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_YERPN (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=sthA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  260 VKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_YERPG (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=sthA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  260 VKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_YERPE (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis GN=sthA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  260 VKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_YERPB (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=sthA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  260 VKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_YERPA (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=sthA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  260 VKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_YERP3 (Soluble pyridine nucleotide transhydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=sthA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 74/200 (37.00%), Postives = 117/200 (58.50%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            ++AD +L + GRT  T+GLGL+ IG+E D  G + VN  + T +  VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++    + ++ E        +PTM+EA + AA+
Sbjct:  260 VKADCLLYANGRTGNTSGLGLENIGLEADSRGLLKVNSMYQTALSHVYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEANVHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMDTGSLKILFHRETKQILGIHCFGERAAEIIHIGQAIMEQKGEGNTLEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_ENT38 (Soluble pyridine nucleotide transhydrogenase OS=Enterobacter sp. (strain 638) GN=sthA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.849e-28
Identity = 74/200 (37.00%), Postives = 116/200 (58.00%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L+ IG+ TD  G++ VN  + T +P +YA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +  + G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALENIGLTTDSRGQLKVNSMYQTALPHIYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTSMKVPYEVGRAQFKHLARAQIVGMSVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
[Close]
BLAST of CF832401 vs. ExPASy Swiss-Prot
Match: STHA_CITK8 (Soluble pyridine nucleotide transhydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.414e-28
Identity = 75/200 (37.50%), Postives = 115/200 (57.50%), Query Frame = -3 
Query:  163 LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH--EAVLAINYDASS-EDIARVCHAHPTMSEALKEAAM 750
            L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T +P +YA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +ILG+H     A E+IH  +A++      ++ E        +PTM+EA + AA+
Sbjct:  260 LKADCLLYANGRTGNTDSLALGNIGLETDSRGQLKVNSMYQTALPHIYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAAL 459
The following BLAST results are available for this feature:
BLAST of CF832401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
STHA_YERPS1.415e-2837.00Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPP1.415e-2837.00Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPN1.415e-2837.00Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPG1.415e-2837.00Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPE1.415e-2837.00Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPB1.415e-2837.00Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERPA1.415e-2837.00Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_YERP31.415e-2837.00Soluble pyridine nucleotide transhydrogenase OS=Ye... [more]
STHA_ENT381.849e-2837.00Soluble pyridine nucleotide transhydrogenase OS=En... [more]
STHA_CITK82.414e-2837.50Soluble pyridine nucleotide transhydrogenase OS=Ci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832401 ID=CF832401; Name=CF832401; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTGAGCAATACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGG
ACAATTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTC
AAACAAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTT
GTCGTGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGAT
GTGCATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATG
GCCAGGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATG
AACCCCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTC
CTTCAGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAAT
TTCCCCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTT
CCCAACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTAT
CATAGTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACC
CCATCCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCC
AATCGCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTA
TCCGTCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCA
GCGGTGAATGGAGTCCGGCCAGCAGACACAAGAACAACATCAGCTTCAAG
TATGGTCTTTTCACCACCAGCTGCTGGTTCAAGGG
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