CF832413

Overview
NameCF832413
Unique NameCF832413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig151 contig Csv1_Contig151:410..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832413 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.623e-30
Identity = 70/185 (37.84%), Postives = 112/185 (60.54%), Query Frame = 1
Query:    1 RARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 528
            RA NY I   D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +   + + C DE   D+++P +
Sbjct:  869 RAENYDISPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYV 1053          
BLAST of CF832413 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.623e-30
Identity = 70/185 (37.84%), Postives = 112/185 (60.54%), Query Frame = 1
Query:    1 RARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 528
            RA NY I   D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +   + + C DE   D+++P +
Sbjct:  869 RAENYDISPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYV 1053          
BLAST of CF832413 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 68/182 (37.36%), Postives = 105/182 (57.69%), Query Frame = 1
Query:    1 RARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPV-PPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHK---ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVD-EDDNDIDIPQI 528
            RA NY I   DK K K IAG+IIPA+ T+TA+  G VC+EL KV+     LE Y++TF NL +P F   EP+  PK    +  +WT+WDR+ +  + TL++ L   + K GL+   +S    LL+ ++F   K   ER+  K+  L   ++K  LP  +++  + + C D E  +D+D+P +
Sbjct:  833 RATNYAISPADKHKTKGIAGKIIPALVTTTAVVAGFVCIELIKVIQ-NKALEKYKSTFMNLGIPFFGFVEPIAAPKNKIREGWTWTLWDRFDVDGDITLKEFLDLFEKKHGLDISMLSCKVTLLY-ALFTDKKTKEERLKMKISQLYETLSKKPLPKDKKYLLLEICCNDTETGDDVDVPSV 1012          
BLAST of CF832413 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 64/187 (34.22%), Postives = 104/187 (55.61%), Query Frame = 1
Query:    1 RARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFK-HQDMSWTVWDRWIL--RDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDI--PQISIYFS 543
            RA+ Y I   D+ K K IAG+IIPAIAT+TA  +GLV LE+ KV  GG+  E Y+N F NLA+P+    E    +  K    +S+T+WDRW +  +++ TL   +  +++K G+    +  G  +L+  + P H +R+   +  LV+   +      +++ D+ V+   + D D D+  P +  YFS
Sbjct:  869 RAKMYSIEPADRFKTKRIAGKIIPAIATTTATVSGLVALEMIKV-TGGYPFEAYKNCFLNLAIPIVVFTETTEVRKTKIRNGISFTIWDRWTVHGKEDFTLLDFINAVKEKYGIEPTMVVQGVKMLYVPVMPGHAKRLKLTMHKLVKPTTE------KKYVDLTVSFAPDIDGDEDLPGPPVRYYFS 1048          
BLAST of CF832413 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 63/187 (33.69%), Postives = 102/187 (54.55%), Query Frame = 1
Query:    1 RARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVP-PKVFKHQDMSWTVWDRWIL--RDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDI--PQISIYFS 543
            RA+ Y I   D+ K K IAG+IIPAIATSTA  +GLV LE+ KV  GG+  + Y+N F NLA+P+    E     K      +S+T+WDRW +  +++ TL   +  +++  G+    +  G  +L+  + P H +R+   +  LV+   +      +++ D+ V+   + D D D+  P +  YFS
Sbjct:  869 RAKMYSIEPADRFKTKRIAGKIIPAIATSTAAVSGLVALEMIKVA-GGYPFDAYKNCFLNLAIPIIVFTETSEVRKTEIRNGISFTIWDRWTVHGKEDFTLSDFINAVKENYGIEPTMVVQGVKMLYVPVMPGHAKRLKLTMHKLVKPSTE------KKYVDLTVSFAPDADGDEDLPGPPVRYYFS 1048          
BLAST of CF832413 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 1
Query:    1 RARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWIL---RDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHK--ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 528
            R +NYGIP V++ ++K I G+IIPAIAT+TA   GL+ LELYKV+ G      +R+++ +LA        P  P +     + WT WDR  +   +   TL  LL  LQ++ GL    + +GS LL+ + +   K  + +  +V +LV+ +   + P   Q   V+    + DD D   P +
Sbjct:  828 RCQNYGIPPVNRAQSKRIVGQIIPAIATTTAAVAGLLGLELYKVVSGPRPRSAFRHSYLHLAENYLIRYMPFAPAIQTFHHLKWTSWDRLKVPAGQPERTLESLLAHLQEQHGLRVRILLHGSALLYAAGWSPEKQAQHLPLRVTELVQQLT-GQAPAPGQRVLVLELSCEGDDEDTAFPPL 1008          
The following BLAST results are available for this feature:
BLAST of CF832413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBA1_RAT1.623e-3037.84Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_MOUSE1.623e-3037.84Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_DICDI7.803e-2537.36Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]
UBA6_HUMAN2.350e-2134.22Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]
UBA6_MOUSE3.393e-2033.69Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA7_HUMAN1.862e-1833.52Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832413 ID=CF832413; Name=CF832413; organism=Citrus sinensis; type=EST; length=697bp
AGGGCAAGGAACTATGGCATCCCTGAAGTTGACAAGCTCAAGGCCAAGTT
CATTGCAGGGAGGATTATCCCAGCAATCGCAACCTCTACTGCCATGGCAA
CTGGTCTTGTGTGCTTGGAGCTTTATAAGGTTCTAGATGGTGGGCACAAA
CTGGAAGACTACCGAAATACCTTTGCCAATCTGGCCCTCCCTCTGTTCTC
GATGGCTGAGCCAGTTCCACCTAAGGTGTTCAAGCATCAGGATATGAGCT
GGACTGTGTGGGACCGGTGGATTTTGCGGGACAACCCTACACTAAGACAA
CTTCTTCAGTGGTTGCAGGACAAGGGCTTGAATGCTTACAGCATCTCCTA
TGGGAGTTGCTTGCTTTTTAACAGCATGTTTCCGAGGCACAAAGAAAGGA
TGGACAAGAAGGTGGTGGATCTGGTTAGGGATGTGGCCAAGGCAGAACTG
CCTCCATATCGACAACATTTTGATGTGGTAGTCGCATGCGTGGATGAAGA
TGACAATGATATTGATATTCCTCAAATCTCAATTTACTTTAGTTAGGTGT
TTCCGTCTAGTTAATTAGTTGACATTTATTGGTAGGATGAAAAATGAATG
ATATGCTTTGTGAACATGAGCAGATGTACTGGATTTGTTATGGTGACTAA
ATATTCTCCTATCAATCAGTAGCTTATTCAGTTCCAAAAAAAAAAAA
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