CF832415

Overview
NameCF832415
Unique NameCF832415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3382 contig Csv1_Contig3382:611..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALHS (Bifunctional polymyxin resistance protein arnA OS=Salmonella heidelberg (strain SL476) GN=arnA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.629e-34
Identity = 78/207 (37.68%), Postives = 118/207 (57.00%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALEP (Bifunctional polymyxin resistance protein arnA OS=Salmonella enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.629e-34
Identity = 78/207 (37.68%), Postives = 118/207 (57.00%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALDC (Bifunctional polymyxin resistance protein arnA OS=Salmonella dublin (strain CT_02021853) GN=arnA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.629e-34
Identity = 78/207 (37.68%), Postives = 118/207 (57.00%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALCH (Bifunctional polymyxin resistance protein arnA OS=Salmonella choleraesuis GN=arnA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.629e-34
Identity = 78/207 (37.68%), Postives = 118/207 (57.00%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    +     G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V+S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLSAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVASRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALA4 (Bifunctional polymyxin resistance protein arnA OS=Salmonella agona (strain SL483) GN=arnA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.629e-34
Identity = 78/207 (37.68%), Postives = 118/207 (57.00%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.629e-34
Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +IEN   R NG I N+GNP NE ++RQL E +   +    + G         +V S+ FYG+GY D   R P +    + +GW P   L + +  TL +
Sbjct:  450 EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVVDGIEALARIIENRDGRCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGHFPPFAGFREVESQSFYGKGYQDVSHRTPSIDNAKKLIGWTPGIELSETIGKTLDF 651          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.896e-34
Identity = 80/215 (37.21%), Postives = 119/215 (55.35%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAI 682
            ED S  I G I KQRW Y+ +KQL++R+I+A G + G +FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KLVDGG+ +R F  I D IEA+  +IEN     +G I N+GNP NE ++RQLAE++ + +   ++            V S  +YG+GY D + R P +    + L W P   +   +  TL +  R   E +
Sbjct:  446 EDDSRLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLD---NLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENREGLCDGQIINIGNPTNEASIRQLAEILLDSFEDHELRDHFPPFAGFKKVESGSYYGKGYQDVEHRKPSIKNAERLLDWKPTIDMKQTINETLDFFLRGAVEEL 657          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SHIF8 (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri serotype 5b (strain 8401) GN=arnA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.759e-33
Identity = 78/217 (35.94%), Postives = 121/217 (55.76%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + G +FT+  PFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSCYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_SALG2 (Bifunctional polymyxin resistance protein arnA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.759e-33
Identity = 77/207 (37.20%), Postives = 118/207 (57.00%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     +L+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILSLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.759e-33
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  + G + KQRW Y+ +KQL++R+I+A GA+ G  FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D IEA+  +I+N   A NG I N+GNP NE ++RQL E +   +    + G         DV SK FYG GY D   R P +    + L W P   + + + +TL +
Sbjct:  449 EDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIIDNDNDACNGQIINIGNPENEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGTGYQDVAHRKPSIENAKRLLNWEPTVEMSETIGNTLDF 650          
The following BLAST results are available for this feature:
BLAST of CF832415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_SALHS4.629e-3437.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALEP4.629e-3437.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALDC4.629e-3437.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALCH4.629e-3437.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALA44.629e-3437.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEU24.629e-3438.83Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL7.896e-3437.21Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIF81.759e-3335.94Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALG21.759e-3337.20Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEFS1.759e-3338.83Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832415 ID=CF832415; Name=CF832415; organism=Citrus sinensis; type=EST; length=747bp
TAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAG
ATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTAT
GCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGA
GAATGGTCATGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGA
GGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGG
GTTCTGGCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCT
TGTCGACGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTA
TTGAAGCTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCAT
ATTTTCAATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGC
TGAGATGATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGG
AGGAGCCAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATAT
GATGATAGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAGCT
TGGTTGGAACCCGAAGACCTCACTTTGGGACTTGCTTGAATCAACCCTTA
CCTATCAGCACAGGACATATGCGGAGGCCATAAAGCAGGCCGTGGCAAAA
CCAGTTGCATCCAGCTGAGGAGATATAGTGTTCAGATGCTTGTGGCA
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