CF832415

Overview
NameCF832415
Unique NameCF832415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3382 contig Csv1_Contig3382:611..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32
Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 2
Query:   20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 691
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL  + H    E   QA
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32
Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 2
Query:   20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 691
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL  + H    E   QA
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32
Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 2
Query:   20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 691
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL  + H    E   QA
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.659e-32
Identity = 85/232 (36.64%), Postives = 123/232 (53.02%), Query Frame = 2
Query:   20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 691
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + G  FT+ RPFNW+GPR+D    ++    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL  + H    E   QA
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIENARRLLDWQPAIELRETIGKTLDFFLHEALREREAQA 662          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.256e-31
Identity = 77/213 (36.15%), Postives = 115/213 (53.99%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEV---------YAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            E+ S  + G+I+ QRW Y+ +KQL++R+I+A G +N   FTI RPFNWIGP +D     +  +    RV      NL+   P+ +V+ G  +R F  I D IEA+  +I+N   + N  I N+GNPHNE T+ QL +++  +         + K SG   L       S   +YGEGY D D+R P++ I  + L W PKT +   L   + +
Sbjct:  445 EENSNLVTGAIKNQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPGLDDFKIAEKQN---ARVTTQIIFNLINGLPVTIVNNGNQKRCFTDIDDGIEALFEIIKNKNNKCNKKIINIGNPHNEYTIMQLTKIIINIIYSNNRNYNFPKFSGFNML-------SGTNYYGEGYQDIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINF 647          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 56/206 (27.18%), Postives = 88/206 (42.72%), Query Frame = 2
Query:   89 RWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 703
            R  Y   K++ E + YA   + G E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y  +    +A  Q + KP
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 56/206 (27.18%), Postives = 88/206 (42.72%), Query Frame = 2
Query:   89 RWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 703
            R  Y   K++ E + YA   + G E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y  +    +A  Q + KP
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 56/206 (27.18%), Postives = 88/206 (42.72%), Query Frame = 2
Query:   89 RWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 703
            R  Y   K++ E + YA   + G E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y  +    +A  Q + KP
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407          
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 56/206 (27.18%), Postives = 88/206 (42.72%), Query Frame = 2
Query:   89 RWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 703
            R  Y   K++ E + YA   + G E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y  +    +A  Q + KP
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407          
The following BLAST results are available for this feature:
BLAST of CF832415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_PSEAE1.945e-3237.07Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAB1.945e-3237.07Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA81.945e-3237.07Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA75.659e-3236.64Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_WIGBR6.256e-3136.15Bifunctional polymyxin resistance protein arnA OS=... [more]
UXS1_RAT3.228e-1127.18UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB3.228e-1127.18UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE3.228e-1127.18UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN3.228e-1127.18UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832415 ID=CF832415; Name=CF832415; organism=Citrus sinensis; type=EST; length=747bp
TAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAG
ATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTAT
GCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGA
GAATGGTCATGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGA
GGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGG
GTTCTGGCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCT
TGTCGACGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTA
TTGAAGCTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCAT
ATTTTCAATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGC
TGAGATGATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGG
AGGAGCCAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATAT
GATGATAGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAGCT
TGGTTGGAACCCGAAGACCTCACTTTGGGACTTGCTTGAATCAACCCTTA
CCTATCAGCACAGGACATATGCGGAGGCCATAAAGCAGGCCGTGGCAAAA
CCAGTTGCATCCAGCTGAGGAGATATAGTGTTCAGATGCTTGTGGCA
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