CF832415
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32 Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 2 Query: 20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 691 QDP + ED S + G I KQRW Y+ +KQL++R+I+A G + G FT+ RPFNW+GPR+D +D G R + +L+ P++LVDGG +R F + D IEA+ +I+N R +G I N+GNP NE ++RQL E + + A+ A E V S+ FYG+GY D R P + + L W P L + + TL + H E QA Sbjct: 442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32 Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 2 Query: 20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 691 QDP + ED S + G I KQRW Y+ +KQL++R+I+A G + G FT+ RPFNW+GPR+D +D G R + +L+ P++LVDGG +R F + D IEA+ +I+N R +G I N+GNP NE ++RQL E + + A+ A E V S+ FYG+GY D R P + + L W P L + + TL + H E QA Sbjct: 442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32 Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 2 Query: 20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 691 QDP + ED S + G I KQRW Y+ +KQL++R+I+A G + G FT+ RPFNW+GPR+D +D G R + +L+ P++LVDGG +R F + D IEA+ +I+N R +G I N+GNP NE ++RQL E + + A+ A E V S+ FYG+GY D R P + + L W P L + + TL + H E QA Sbjct: 442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.659e-32 Identity = 85/232 (36.64%), Postives = 123/232 (53.02%), Query Frame = 2 Query: 20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 691 QDP + ED S + G I KQRW Y+ +KQL++R+I+A G + G FT+ RPFNW+GPR+D ++ G R + +L+ P++LVDGG +R F + D IEA+ +I+N R +G I N+GNP NE ++RQL E + + A+ A E V S+ FYG+GY D R P + + L W P L + + TL + H E QA Sbjct: 442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIENARRLLDWQPAIELRETIGKTLDFFLHEALREREAQA 662
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.256e-31 Identity = 77/213 (36.15%), Postives = 115/213 (53.99%), Query Frame = 2 Query: 47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEV---------YAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655 E+ S + G+I+ QRW Y+ +KQL++R+I+A G +N FTI RPFNWIGP +D + + RV NL+ P+ +V+ G +R F I D IEA+ +I+N + N I N+GNPHNE T+ QL +++ + + K SG L S +YGEGY D D+R P++ I + L W PKT + L + + Sbjct: 445 EENSNLVTGAIKNQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPGLDDFKIAEKQN---ARVTTQIIFNLINGLPVTIVNNGNQKRCFTDIDDGIEALFEIIKNKNNKCNKKIINIGNPHNEYTIMQLTKIIINIIYSNNRNYNFPKFSGFNML-------SGTNYYGEGYQDIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINF 647
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11 Identity = 56/206 (27.18%), Postives = 88/206 (42.72%), Query Frame = 2 Query: 89 RWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 703 R Y K++ E + YA + G E + R FN GPRM G RV++ F L+ +PL + G R F Y+ D + ++ ++ + + N+GNP E T+ + A+++ + SG S +F E DD KR PD+ LGW P L + L + Y + +A Q + KP Sbjct: 228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11 Identity = 56/206 (27.18%), Postives = 88/206 (42.72%), Query Frame = 2 Query: 89 RWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 703 R Y K++ E + YA + G E + R FN GPRM G RV++ F L+ +PL + G R F Y+ D + ++ ++ + + N+GNP E T+ + A+++ + SG S +F E DD KR PD+ LGW P L + L + Y + +A Q + KP Sbjct: 228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11 Identity = 56/206 (27.18%), Postives = 88/206 (42.72%), Query Frame = 2 Query: 89 RWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 703 R Y K++ E + YA + G E + R FN GPRM G RV++ F L+ +PL + G R F Y+ D + ++ ++ + + N+GNP E T+ + A+++ + SG S +F E DD KR PD+ LGW P L + L + Y + +A Q + KP Sbjct: 228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407
BLAST of CF832415 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11 Identity = 56/206 (27.18%), Postives = 88/206 (42.72%), Query Frame = 2 Query: 89 RWSYACAKQLIERLIYAEGAENGHEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 703 R Y K++ E + YA + G E + R FN GPRM G RV++ F L+ +PL + G R F Y+ D + ++ ++ + + N+GNP E T+ + A+++ + SG S +F E DD KR PD+ LGW P L + L + Y + +A Q + KP Sbjct: 228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407 The following BLAST results are available for this feature:
BLAST of CF832415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832415 ID=CF832415; Name=CF832415; organism=Citrus sinensis; type=EST; length=747bpback to top |