CF832423

Overview
NameCF832423
Unique NameCF832423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.740e-33
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            + I CPDD++ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD Q+  GFVLTC AYPTSD TI THKEE+L
Sbjct:   14 QTIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 6.380e-33
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I  PDD +ILDAAEEAG+DLPYSCRAGACS+C GK++SGTVDQS+QSFLDDDQI  G+VLTC AYPTSD  IETHKEEEL
Sbjct:   19 IEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.380e-33
Identity = 61/82 (74.39%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            +E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+Q+ EG+VLTC AYPTSDV IETHKEE +
Sbjct:   66 QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 8.333e-33
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEE+L
Sbjct:   17 IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 8.333e-33
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEE+L
Sbjct:   17 IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.333e-33
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            E NCPDD +ILD+AEE G DLPYSCRAGACSSC GK+ +G VDQS+ SFLDDDQ+ EGFVLTC AYP S+VTIETHKE++L G
Sbjct:   15 EFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDLVG 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.333e-33
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            E NCPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   15 EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.333e-33
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            E NCPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   15 EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.333e-33
Identity = 64/81 (79.01%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKV +G VDQS+ SFLDDDQIGEG+VLTC AYPTSDV IETHKEEEL
Sbjct:   16 EFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEEL 96          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.088e-32
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I  PDD FILDA EEAGLDLPYSCRAGACSSCTGK++ G VDQSEQSFLDDDQ+ EGFVLTC AYP  D+TIETH EE+L
Sbjct:   16 IEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
The following BLAST results are available for this feature:
BLAST of CF832423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER_SCEQU3.740e-3379.27Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER_MASLA6.380e-3380.00Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_ARATH6.380e-3374.39Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER_SYNY48.333e-3378.75Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY38.333e-3378.75Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_SOLLY8.333e-3374.70Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_DATST8.333e-3375.90Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU8.333e-3375.90Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FERB_ALOMA8.333e-3379.01Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_GLEJA1.088e-3280.00Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832423 ID=CF832423; Name=CF832423; organism=Citrus sinensis; type=EST; length=494bp
GAAGAAATCAACTGTCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGA
AGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCT
GTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT
CTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTA
TCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTG
GTTAATAATGTGCTCTTGATAACACATTATTATCTTCTCTTTTATGTGTT
GTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAATTTG
AGAATGATTCTTGTAATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTG
TAATTGCACCGGCCATGAATGCGCATCGTACCTAGAGGGTGAGGTTTCTC
ATCCCATCCGAACATGGTACCGTTCTATAAAAAAAAAAAAAAAA
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