CF832452

Overview
NameCF832452
Unique NameCF832452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:654..1190. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.595e-28
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = -3
Query:  212 VDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 538
            VDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG      V +RIG++            DNLDC NQ+P+
Sbjct:  102 VDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.390e-28
Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  212 DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 535
            D L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC   G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  183 DGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.288e-27
Identity = 55/117 (47.01%), Postives = 79/117 (67.52%), Query Frame = -3
Query:  188 DLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 535
            DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+  ++M+ S
Sbjct:  223 DLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.682e-27
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = -3
Query:  188 DLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 535
            DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+   +M+ S
Sbjct:  223 DLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.349e-27
Identity = 54/109 (49.54%), Postives = 70/109 (64.22%), Query Frame = -3
Query:  212 DLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 535
            +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  196 NLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.786e-14
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  236 DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTFCGKFGIQPGDNL 535
            DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G +L
Sbjct:  260 DLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.106e-14
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = -3
Query:  230 DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 535
            D L NP+ +ATD   SFK+A+WFWMT                     +V++    G+G TT  ING +EC     D   +RI F+  +C  FG+ PGDNL C
Sbjct:  208 DGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = -3
Query:  230 DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 535
            D L +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  208 DGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.254e-13
Identity = 35/102 (34.31%), Postives = 56/102 (54.90%), Query Frame = -3
Query:  230 DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 535
            D LN+PD++  DP++SFK+++WFW+     +     VI+D  +            G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:  166 DGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CF832452 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 36/102 (35.29%), Postives = 51/102 (50.00%), Query Frame = -3
Query:  230 DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 535
            D L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  205 DGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
The following BLAST results are available for this feature:
BLAST of CF832452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CHIT_AVESA2.595e-2852.29Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI10_ORYSJ3.390e-2847.22Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ1.288e-2747.01Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.682e-2747.01Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_POPTR8.349e-2749.54Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
AGI_URTDI2.786e-1440.78Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIP_BETVU8.106e-1438.24Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ2.358e-1336.27Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA5.254e-1334.31Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_ORYSJ1.170e-1235.29Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832452 ID=CF832452; Name=CF832452; organism=Citrus sinensis; type=EST; length=540bp
GTTTTTTTTTCCTTTTTTTTTTTTTTGGAGAAGACTCATTGATCCATGTT
GGATCAGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTAGTTG
TCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAA
GCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGGGCCATC
AGATTAAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGG
CTGAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTAC
GTACAGCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATA
TTTGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGC
TGATGGTTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTG
GCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGA
TCAGTGGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCC
back to top