CF832465

Overview
NameCF832465
Unique NameCF832465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.293e-34
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  523 CEKMGLKKGPWTPEEDQILINYIQLYGHG-NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 834
            C+K  +K+GPW+PEED  L +YI+ YG+G NW + P +AGL RCGKSCRLRW+NYLRP+IK G+F+ EE+  I +L   +G+RWS IAA LPGRTDN+IKN W+T
Sbjct:    7 CDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNT 111          
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 7.323e-34
Identity = 63/99 (63.64%), Postives = 82/99 (82.83%), Query Frame = -2
Query:  523 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 819
            ++KG W+PEED+ L N+I  +G G W ++P+ A L RCGKSCRLRWINYLRPD+KRG F+++EED I+ LH++LGNRWS IA+ LPGRTDNEIKN W++
Sbjct:   14 VRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNS 112          
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.323e-34
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = -2
Query:  523 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 819
            ++KGPWT EED ILINYI  +G G W +L K AGL R GKSCRLRW+NYLRPD++RGN T EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W T
Sbjct:   20 VRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRT 118          
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.631e-33
Identity = 65/99 (65.66%), Postives = 75/99 (75.76%), Query Frame = -2
Query:  523 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 819
            ++KGPWT EED ILINYI  +G G W +L + AGL R GKSCRLRW+NYLRPD++RGN T EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W T
Sbjct:   13 VRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRT 111          
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.131e-33
Identity = 64/105 (60.95%), Postives = 82/105 (78.10%), Query Frame = -2
Query:  523 CEKMGLKKGPWTPEEDQILINYIQLYGHG-NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 834
            C+K  +K+GPW+PEED  L +YI+  G G NW ALP +AGL RCGKSCRLRW+NYLRP+I+ G+FT EE++ I +L   +G+RWS IAA L GRTDN+IKN W+T
Sbjct:    7 CDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNT 111          
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.783e-33
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = -2
Query:  520 GLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 822
            GL+KG WT EED +L   I  YG G W  +P +AGL RC KSCRLRW+NYL+P IKRG F+ +E D ++ LH++LGNRWS IA RLPGRT N++KN W+TH
Sbjct:    7 GLRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTH 107          
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.057e-32
Identity = 60/101 (59.41%), Postives = 74/101 (73.27%), Query Frame = -2
Query:  520 GLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 822
            GL+KG WT EED +L   I  YG G W  +P +AGL RC KSCRLRW+NYL+P IKRG  + +E D ++ LH +LGNRWS IA RLPGRT N++KN W+TH
Sbjct:    7 GLRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTH 107          
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.381e-32
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = -2
Query:  520 GLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 822
            GL+KG WT EED +L   I  YG G W  +P +AGL RC KSCRLRW+NYL+P IKRG  + +E D ++ LH++LGNRWS IA RLPGRT N++KN W+TH
Sbjct:    7 GLRKGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTH 107          
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.804e-32
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = -2
Query:  526 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWH 819
            ++KGPWT EED ILIN+I  +G G W  + + AGL R GKSCRLRW+NYLRPD++RGN T EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W+
Sbjct:   13 VRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWN 110          
BLAST of CF832465 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.077e-32
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = -2
Query:  430 GLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXQEPVINNHSNANHVTARSEI 822
            GL+KG WT EED +L   I  YG G W  +P + GL RC KSCRLRW+NYL+P IKRG    +E D ++ LH++LGNRWS IA RLPGRT N++KN W+TH          +  +IN +  ++  ++  +I
Sbjct:    7 GLRKGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHDERCCKTKMINKNITSHPTSSAQKI 137          
The following BLAST results are available for this feature:
BLAST of CF832465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RAX1_ARATH4.293e-3460.95Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
MYB3_HORVU7.323e-3463.64Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB21_ARATH7.323e-3466.67Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA1.631e-3365.66Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
RAX2_ARATH2.131e-3360.95Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MY114_ARATH2.783e-3360.40Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB75_ARATH1.057e-3259.41Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB90_ARATH1.381e-3259.41Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYB40_ANTMA1.804e-3263.27Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MY113_ARATH3.077e-3247.33Transcription factor MYB113 OS=Arabidopsis thalian... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832465 ID=CF832465; Name=CF832465; organism=Citrus sinensis; type=EST; length=835bp
TTTTTTTTTTTTTTTTTCCACTAAGAAAGTGAAAATTAGTTACTTTAATC
ATAAAATTTCTGGTAACATTTCTGAGAAATCTCCAGCTTTGGTGAAAAGA
TTGAACCAAAAGTCGGTGTTATCACACAAAGTAGAACCAGGTCTAAAAGC
ATCGAGTGATGATTGAAATTCAACTATAGACAGTGGGTCGGCGCCTCCAA
CCGCTGAAAAACGATCATTGCTGTCCTCAATACTAATGCCCGAGTTCTCA
GCCGACAACACTTCCGTCCAAAAATTCTCATCTATTTCAACCAAGCTGTC
GTGATTGTTTTCGGACGACGACGGCTCTGTTTTCACGCAAGCGTTATTAG
CCGCGGAGGAGGTGACGGACGACATGTCGCTTGAAGTAGTAGTCGAGTCT
TGCCGATCGGGAGTACTGGCGCCGCTGCAAATCTCGGATCTCGCCGTAAC
ATGATTAGCGTTACTATGATTATTAATCACGGGCTCTTGTTGTTGCTTTT
GCTTGAGACGCTTTTTCAAGTGAGTGTGCCAAACATTTTTAATTTCGTTG
TCCGTTCTTCCCGGAAGTCTTGCTGCGATTGCTGACCATCTATTTCCGAG
CATTTCATGTAGGTTGATGATAGTGTCCTCTTCTTCTCTGGTGAAATTTC
CCCGTTTAATATCCGGCCGCAAGTAATTTATCCACCGGAGCCGGCAACTC
TTTCCACATCTTAATAAACCTGCTTGTTTGGGAAGTGCCCGCCAGTTGCC
ATGGCCATAAAGTTGAATGTAATTGATTAAAATTTGATCTTCTTCAGGAG
TCCATGGACCTTTCTTCAATCCCATCTTCTCGCAG
back to top