CF832466

Overview
NameCF832466
Unique NameCF832466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2932 contig Csv1_Contig2932:262..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.772e-44
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R+PCCEK    KG WT EED  L+ YI+ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 83/141 (58.87%), Postives = 99/141 (70.21%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXXEPVINNHSNANHVTARSEI 491
            M R+PCCEK    KG WT EED  L  YI+ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNF+ EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH           +PV +   N++H  +   I
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH-IRRKLTSRGIDPVTHRAINSDHAASNITI 140          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R+PCCEK    KG WT EED  LI+YI+ +G G WR+LP+ AGL RCGKSCRLRWINYLRPD+KRGNFT EE+D II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.959e-43
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R PCC+K+G+KKGPWTPEED IL++YIQ +G GNWRA+P   GLLRC KSCRLRW NYLRP IKRG+FT  EE  II+L  +LGNRW+AIA+ LP RTDN+IKN W+TH
Sbjct:    1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.404e-41
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 3
Query:   69 MVRAPCCEK-MGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R+PCC++  G+KKGPW PEED  L  YI   G+GNWR+LPK AGL RCGKSCRLRW+NYLRPDI+RG F+  EE TI+ LH +LGN+WS IA  LPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTH 112          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.834e-41
Identity = 76/110 (69.09%), Postives = 90/110 (81.82%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            M R PCCEK+GL++GPWT EEDQ L+++I   G   WRA+PK AGLLRCGKSCRLRW NYLRPD+KRG F+  EE+ I++LH  LGNRWS IAA+LPGRTDNEIKN W+T
Sbjct:    1 MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNT 110          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.967e-41
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R PCC+K+G+KKGPWT EED+ LI++I   G   WRA+PK AGL RCGKSCRLRW NYLRPD+KRG  +  EE  +I+LH  LGNRWS IAARLPGRTDNEIKN W+TH
Sbjct:    1 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.458e-40
Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            M R  CC K  L+KG W+PEED+ L+NYI  +GHG W ++PK AGL RCGKSCRLRWINYLRPD+KRG F+++EE  II LH  LGNRWS IA RLPGRTDNEIKN W++
Sbjct:    1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNS 110          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.993e-39
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            M R  CC K G+K+G WT +ED  L  Y++ +G G WR +P++AGL RCGKSCRLRW+NYLRP+I+RGN + +EED II LH +LGNRWS IA RLPGRTDNEIKN W++
Sbjct:    1 MGRRACCAKEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNS 110          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.993e-39
Identity = 73/111 (65.77%), Postives = 83/111 (74.77%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R PC EK GLK+GPWT EEDQ L +Y+   G   WR +PK AGL RCGKSCRLRW+NYLRPD+K+G  T  EE+ II LH  LGNRWS IA  +PGRTDNEIKN W+TH
Sbjct:    1 MERQPCREKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTH 111          
The following BLAST results are available for this feature:
BLAST of CF832466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB08_ANTMA1.772e-4471.17Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB1_HORVU3.947e-4458.87Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB32_ARATH5.155e-4471.17Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB06_ANTMA1.959e-4369.37Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB39_ARATH1.404e-4167.86Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB2_PHYPA1.834e-4169.09Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
ODO1_PETHY6.967e-4168.47Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB86_ARATH3.458e-4067.27Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYBC_MAIZE4.993e-3962.73Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB15_ANTMA4.993e-3965.77Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832466 ID=CF832466; Name=CF832466; organism=Citrus sinensis; type=EST; length=765bp
CAAAAAATTTGATCTTAGAGAATTAAAAAGATACATAGCAAAGTTAAATA
TACTGCGGTGGTCCGAAAATGGTGAGAGCTCCATGCTGCGAGAAGATGGG
ATTGAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAATTTTAATCAATT
ACATTCAACTTTATGGCCATGGCAACTGGCGGGCACTTCCCAAACAAGCA
GGTTTATTAAGATGTGGAAAGAGTTGCCGGCTCCGGTGGATAAATTACTT
GCGGCCGGATATTAAACGGGGAAATTTCACCAGAGAAGAAGAGGACACTA
TCATCAACCTACATGAAATGCTCGGAAATAGATGGTCAGCAATCGCAGCA
AGACTTCCGGGAAGAACGGACAACGAAATTAAAAATGTTTGGCACACTCA
CTTGAAAAAGCGTCTCAAGCAAAAGCAACAACAAGAGCCCGTGATTAATA
ATCATAGTAACGCTAATCATGTTACGGCGAGATCCGAGATCTGCAGCGGC
GCCAGTACTCCCGATCGGCAAGACTCGACTACTACTTCAAGCGACATGTC
GTCCGTCACCTCCTCCGCGGCTAATAACGCTTGCGTGAAAACAGAGCCGT
CGTCGTCCGAAAACAATCACGACAGCTTGGTTGAAATAGATGAGAATTTT
TGGACGGAAGTGTTGTCGGCTGAGAACTCGGGCATTAGTATTGAGGACAG
CAATGATCGTTTTTCAGCGGTTGGAGGCGCCGACCCACTGTCTATAGTTG
AATTTTCATCATCAC
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