CF832466

Overview
NameCF832466
Unique NameCF832466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2932 contig Csv1_Contig2932:262..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.606e-37
Identity = 71/111 (63.96%), Postives = 89/111 (80.18%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHG-NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            M RAPCC+K  +KKGPW+PEED  L +YI+  G G NW ALP++ GL RCGKSCRLRW+NYLRP+IK G F+ EEE+ I +L+  +G+RWS IAA+LPGRTDN+IKN W+T
Sbjct:    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNT 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.740e-37
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHG-NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            M RAPCC+K  +K+GPW+PEED  L +YI+ YG+G NW + P +AGL RCGKSCRLRW+NYLRP+IK G+F+ EE+  I +L   +G+RWS IAA LPGRTDN+IKN W+T
Sbjct:    1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNT 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.674e-37
Identity = 64/99 (64.65%), Postives = 83/99 (83.84%), Query Frame = 3
Query:  105 KKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            KKG WT EED+IL++Y++ +G G+W  + K+ GL RCGKSCRLRW+NYL P++KRGNFT +EED II LH++LGNRWS IA R+PGRTDN++KN W+TH
Sbjct:   17 KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTH 115          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.360e-36
Identity = 69/111 (62.16%), Postives = 87/111 (78.38%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHG-NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            M RAPCC+K  +K+GPW+PEED  L +YI+  G G NW ALP +AGL RCGKSCRLRW+NYLRP+I+ G+FT EE++ I +L   +G+RWS IAA L GRTDN+IKN W+T
Sbjct:    1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNT 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.319e-36
Identity = 63/99 (63.64%), Postives = 82/99 (82.83%), Query Frame = 3
Query:  105 KKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            KKG WT EED+IL++Y++ +G G+W  + K+ GL RCGKSCRLRW+NYL P++ RGNFT +EED II LH++LGNRWS IA R+PGRTDN++KN W+TH
Sbjct:   13 KKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.151e-35
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXXEPVINNHSNAN 467
            L +G WT  ED+IL +YI  +G G W  LP QAGL RCGKSCRLRW NYLRP IKRGN + +EE+ II LH +LGNRWS IA RLPGRTDNEIKN W+++           +P    HS  N
Sbjct:   14 LNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQPKRIKHSTNN 135          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.503e-35
Identity = 71/128 (55.47%), Postives = 87/128 (67.97%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXXEPVINNHSNANHVTARS 485
            +KKG W+PEED  L+ Y+   G G W  + K AGL RCGKSCRLRWINYLRPD+KRG F+ +EED II  H +LGNRWS IAARLPGRTDNEIKN W++              +INN S++ +  + S
Sbjct:   18 MKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLINNSSSSPNTASDS 145          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.349e-35
Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            LKKGPWT  ED IL++Y++ +G GNW A+ K  GL RCGKSCRLRW N+LRP++K+G FT EEE  II LH  +GN+W+ +AA LPGRTDNEIKN W+T
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNT 138          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.349e-35
Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            LKKGPWT  ED IL++Y++ +G GNW A+ K  GL RCGKSCRLRW N+LRP++K+G FT EEE  II LH  +GN+W+ +AA LPGRTDNEIKN W+T
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNT 138          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.713e-35
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 3
Query:   90 EKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            E    KKG WT EED IL++Y+  +G G W  + ++ GL RCGKSCRLRW+NYL P++ +GNFT +EED II LH++LGNRWS IA R+PGRTDN++KN W+TH
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTH 113          
The following BLAST results are available for this feature:
BLAST of CF832466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RAX3_ARATH1.606e-3763.96Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
RAX1_ARATH2.740e-3762.16Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
WER_ARATH4.674e-3764.65Transcription factor WER OS=Arabidopsis thaliana G... [more]
RAX2_ARATH1.360e-3662.16Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MYB23_ARATH2.319e-3663.64Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
TT2_ARATH1.151e-3557.38Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB46_ARATH1.503e-3555.47Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
GAM1_ORYSJ3.349e-3563.64Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI3.349e-3563.64Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GL1_ARATH5.713e-3559.62Trichome differentiation protein GL1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832466 ID=CF832466; Name=CF832466; organism=Citrus sinensis; type=EST; length=765bp
CAAAAAATTTGATCTTAGAGAATTAAAAAGATACATAGCAAAGTTAAATA
TACTGCGGTGGTCCGAAAATGGTGAGAGCTCCATGCTGCGAGAAGATGGG
ATTGAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAATTTTAATCAATT
ACATTCAACTTTATGGCCATGGCAACTGGCGGGCACTTCCCAAACAAGCA
GGTTTATTAAGATGTGGAAAGAGTTGCCGGCTCCGGTGGATAAATTACTT
GCGGCCGGATATTAAACGGGGAAATTTCACCAGAGAAGAAGAGGACACTA
TCATCAACCTACATGAAATGCTCGGAAATAGATGGTCAGCAATCGCAGCA
AGACTTCCGGGAAGAACGGACAACGAAATTAAAAATGTTTGGCACACTCA
CTTGAAAAAGCGTCTCAAGCAAAAGCAACAACAAGAGCCCGTGATTAATA
ATCATAGTAACGCTAATCATGTTACGGCGAGATCCGAGATCTGCAGCGGC
GCCAGTACTCCCGATCGGCAAGACTCGACTACTACTTCAAGCGACATGTC
GTCCGTCACCTCCTCCGCGGCTAATAACGCTTGCGTGAAAACAGAGCCGT
CGTCGTCCGAAAACAATCACGACAGCTTGGTTGAAATAGATGAGAATTTT
TGGACGGAAGTGTTGTCGGCTGAGAACTCGGGCATTAGTATTGAGGACAG
CAATGATCGTTTTTCAGCGGTTGGAGGCGCCGACCCACTGTCTATAGTTG
AATTTTCATCATCAC
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