CF832466

Overview
NameCF832466
Unique NameCF832466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2932 contig Csv1_Contig2932:262..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.713e-35
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 3
Query:   90 EKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            E    KKG WT EED IL++Y+  +G G W  + ++ GL RCGKSCRLRW+NYL P++ +GNFT +EED II LH++LGNRWS IA R+PGRTDN++KN W+TH
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTH 113          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.835e-34
Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 3
Query:   93 KMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            K  +K+G W PEED IL +Y++ +G GNW  + +++GL R GKSCRLRW NYLRP+IKRG+ + +E+D II +H++LGNRWS IA RLPGRTDNE+KN W+TH
Sbjct:    9 KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.835e-34
Identity = 68/111 (61.26%), Postives = 81/111 (72.97%), Query Frame = 3
Query:   69 MVRAPC-CEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            M + PC  + + ++KGPWT EED ILINYI  +G G W +L + AGL R GKSCRLRW+NYLRPD++RGN T EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W T
Sbjct:    1 MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRT 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 6.316e-34
Identity = 63/99 (63.64%), Postives = 82/99 (82.83%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            ++KG W+PEED+ L N+I  +G G W ++P+ A L RCGKSCRLRWINYLRPD+KRG F+++EED I+ LH++LGNRWS IA+ LPGRTDNEIKN W++
Sbjct:   14 VRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNS 112          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.316e-34
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            ++KGPWT EED ILINYI  +G G W +L K AGL R GKSCRLRW+NYLRPD++RGN T EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W T
Sbjct:   20 VRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRT 118          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 3
Query:   99 GLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            GL+KG WT EED +L   I  YG G W  +P +AGL RC KSCRLRW+NYL+P IKRG F+ +E D ++ LH++LGNRWS IA RLPGRT N++KN W+TH
Sbjct:    7 GLRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTH 107          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.347e-33
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = 3
Query:   69 MVRAPC-CEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWH 395
            M + PC    + ++KGPWT EED ILIN+I  +G G W  + + AGL R GKSCRLRW+NYLRPD++RGN T EE+  I+ LH   GNRWS IA  LPGRTDNEIKN W+
Sbjct:    1 MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWN 110          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 60/101 (59.41%), Postives = 74/101 (73.27%), Query Frame = 3
Query:   99 GLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            GL+KG WT EED +L   I  YG G W  +P +AGL RC KSCRLRW+NYL+P IKRG  + +E D ++ LH +LGNRWS IA RLPGRT N++KN W+TH
Sbjct:    7 GLRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTH 107          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.191e-32
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   99 GLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            GL+KG WT EED +L   I  YG G W  +P +AGL RC KSCRLRW+NYL+P IKRG  + +E D ++ LH++LGNRWS IA RLPGRT N++KN W+TH
Sbjct:    7 GLRKGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTH 107          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 62/131 (47.33%), Postives = 83/131 (63.36%), Query Frame = 3
Query:   99 GLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXXEPVINNHSNANHVTARSEI 491
            GL+KG WT EED +L   I  YG G W  +P + GL RC KSCRLRW+NYL+P IKRG    +E D ++ LH++LGNRWS IA RLPGRT N++KN W+TH             +IN +  ++  ++  +I
Sbjct:    7 GLRKGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHDERCCKTKMINKNITSHPTSSAQKI 137          
The following BLAST results are available for this feature:
BLAST of CF832466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
GL1_ARALY5.713e-3559.62Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYB82_ARATH2.835e-3460.19Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA2.835e-3461.26Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB3_HORVU6.316e-3463.64Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB21_ARATH6.316e-3466.67Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MY114_ARATH2.400e-3360.40Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB40_ANTMA5.347e-3359.09Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB75_ARATH9.121e-3359.41Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB90_ARATH1.191e-3259.41Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MY113_ARATH2.654e-3247.33Transcription factor MYB113 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832466 ID=CF832466; Name=CF832466; organism=Citrus sinensis; type=EST; length=765bp
CAAAAAATTTGATCTTAGAGAATTAAAAAGATACATAGCAAAGTTAAATA
TACTGCGGTGGTCCGAAAATGGTGAGAGCTCCATGCTGCGAGAAGATGGG
ATTGAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAATTTTAATCAATT
ACATTCAACTTTATGGCCATGGCAACTGGCGGGCACTTCCCAAACAAGCA
GGTTTATTAAGATGTGGAAAGAGTTGCCGGCTCCGGTGGATAAATTACTT
GCGGCCGGATATTAAACGGGGAAATTTCACCAGAGAAGAAGAGGACACTA
TCATCAACCTACATGAAATGCTCGGAAATAGATGGTCAGCAATCGCAGCA
AGACTTCCGGGAAGAACGGACAACGAAATTAAAAATGTTTGGCACACTCA
CTTGAAAAAGCGTCTCAAGCAAAAGCAACAACAAGAGCCCGTGATTAATA
ATCATAGTAACGCTAATCATGTTACGGCGAGATCCGAGATCTGCAGCGGC
GCCAGTACTCCCGATCGGCAAGACTCGACTACTACTTCAAGCGACATGTC
GTCCGTCACCTCCTCCGCGGCTAATAACGCTTGCGTGAAAACAGAGCCGT
CGTCGTCCGAAAACAATCACGACAGCTTGGTTGAAATAGATGAGAATTTT
TGGACGGAAGTGTTGTCGGCTGAGAACTCGGGCATTAGTATTGAGGACAG
CAATGATCGTTTTTCAGCGGTTGGAGGCGCCGACCCACTGTCTATAGTTG
AATTTTCATCATCAC
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