CF832466

Overview
NameCF832466
Unique NameCF832466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2932 contig Csv1_Contig2932:262..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.008e-31
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 3
Query:  105 KKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            +KG W+PEED+ L ++I  YGH  W  +P +AGL R GKSCRLRWINYLRP +KR   + EEE+TI+  H  LGN+WS IA  LPGRTDNEIKN WH+H
Sbjct:   11 RKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSH 109          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.317e-31
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 3
Query:   90 EKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            ++ G +KGPWT +ED +L+N++ L+G   W  + K +GL R GKSCRLRW+NYL P +KRG  T +EE  ++ LH   GNRWS IA +LPGRTDNEIKN W TH
Sbjct:    3 QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTH 106          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.005e-31
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 3
Query:  105 KKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            +KGPWT +ED +L+N++ L+G   W  + K +GL R GKSCRLRW+NYL P +KRG  T +EE  ++ LH   GNRWS IA +LPGRTDNEIKN W TH
Sbjct:    9 RKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTH 107          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.746e-29
Identity = 57/100 (57.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            ++KGPWT +ED  L+  ++L+G   W  + K +GL R GKSCRLRW+NYL P +KRG  +  EE  I+ LH   GNRWS IA RLPGRTDNEIKN W TH
Sbjct:    8 IRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTH 107          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.118e-29
Identity = 57/100 (57.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            ++KGPWT +ED  L+  ++L+G   W  + K +GL R GKSCRLRW+NYL P +K G  + +EE  II LH   GNRWS IA RLPGRTDNEIKN W TH
Sbjct:    8 MRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTH 107          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.269e-26
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 3
Query:   93 KMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWH 395
            K    K  W PEED+IL +Y+  YG   W  +PK+ GL     SCR RW+N+L+P +K+G FT EEE  ++ LH +LGN+WS +A   PGRTDNEIKN W+
Sbjct:   13 KKTFTKSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWN 113          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.460e-22
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  +  YG   W  + K     R GK CR RW N+L P++K+ ++T EE+ TI   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct:   87 LIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 184          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.460e-22
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I ++Q YG   W  + K     R GK CR RW N+L P++K+ ++T EE+  I   H+ LGNRW+ IA  LPGRTDN +KN W++
Sbjct:   19 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 116          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.906e-22
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EED+ +I  ++ YG  +W  + KQ    R GK CR RW N+L P++K+ ++T EE+  I   H++LGNRW+ IA  LPGRTDN +KN W++
Sbjct:   81 LVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRG-RMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 178          

HSP 2 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  108 KGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNR-WSAIAARLPGRTDNEIKNVWHTH 401
            K  WTPEED+ L   ++ +G G W+ +       R  + C+ RW+  L PD+ +G +T+EE++ +I L +  G + W+ IA +L GR   + +  WH H
Sbjct:   31 KVKWTPEEDETLKALVKKHGQGEWKTIASNLNN-RTEQQCQHRWLRVLHPDLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNH 128          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.906e-22
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  +Q YG   W  + K     R GK CR RW N+L P++K+ ++T EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNS 182          
The following BLAST results are available for this feature:
BLAST of CF832466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
LAF1_ARATH1.008e-3161.62Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB48_ARATH1.317e-3155.77Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB59_ARATH5.005e-3157.58Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ2.746e-2957.00Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYBA1_ORYSJ6.118e-2957.00Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MY104_ARATH8.269e-2650.50Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB_XENLA1.460e-2250.51Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYB_AVIMB1.460e-2249.49Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYBB_XENLA1.906e-2248.48Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBA_MOUSE1.906e-2250.51Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832466 ID=CF832466; Name=CF832466; organism=Citrus sinensis; type=EST; length=765bp
CAAAAAATTTGATCTTAGAGAATTAAAAAGATACATAGCAAAGTTAAATA
TACTGCGGTGGTCCGAAAATGGTGAGAGCTCCATGCTGCGAGAAGATGGG
ATTGAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAATTTTAATCAATT
ACATTCAACTTTATGGCCATGGCAACTGGCGGGCACTTCCCAAACAAGCA
GGTTTATTAAGATGTGGAAAGAGTTGCCGGCTCCGGTGGATAAATTACTT
GCGGCCGGATATTAAACGGGGAAATTTCACCAGAGAAGAAGAGGACACTA
TCATCAACCTACATGAAATGCTCGGAAATAGATGGTCAGCAATCGCAGCA
AGACTTCCGGGAAGAACGGACAACGAAATTAAAAATGTTTGGCACACTCA
CTTGAAAAAGCGTCTCAAGCAAAAGCAACAACAAGAGCCCGTGATTAATA
ATCATAGTAACGCTAATCATGTTACGGCGAGATCCGAGATCTGCAGCGGC
GCCAGTACTCCCGATCGGCAAGACTCGACTACTACTTCAAGCGACATGTC
GTCCGTCACCTCCTCCGCGGCTAATAACGCTTGCGTGAAAACAGAGCCGT
CGTCGTCCGAAAACAATCACGACAGCTTGGTTGAAATAGATGAGAATTTT
TGGACGGAAGTGTTGTCGGCTGAGAACTCGGGCATTAGTATTGAGGACAG
CAATGATCGTTTTTCAGCGGTTGGAGGCGCCGACCCACTGTCTATAGTTG
AATTTTCATCATCAC
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