CF832466

Overview
NameCF832466
Unique NameCF832466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2932 contig Csv1_Contig2932:262..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.906e-22
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  +Q YG   W  + K     R GK CR RW N+L P++K+ ++T EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNS 182          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.490e-22
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  +  YG   W  + K     R GK CR RW N+L PD+K+ ++T EE+  I + H+ +GNRW+ IA  LPGRTDN IKN W++
Sbjct:   84 LVKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKG-RIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNS 181          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  +Q YG   W  + K     R GK CR RW N+L P++K+ ++T EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 187          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  +Q YG   W  + K     R GK CR RW N+L P++K+ ++T EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 187          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  +Q YG   W  + K     R GK CR RW N+L P++K+ ++T EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 187          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  +Q YG   W  + K     R GK CR RW N+L P++K+ ++T EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 187          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  ++ YG   W  + K     R GK CR RW N+L P++K+ ++T EE+  I   H++LGNRW+ IA  LPGRTDN +KN W++
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 178          

HSP 2 Score: 71.2478 bits (173), Expect = 6.796e-12
Identity = 35/105 (33.33%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   90 EKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNR-WSAIAARLPGRTDNEIKNVWHTH 401
            ++ G  K  WT EED+ L   ++ YG  +W+ L       R  + C+ RW+  L PD+ +G +T+EE+  +I L +  G + W+ IA  L GR   + +  WH H
Sbjct:   25 QRDGRCKVKWTQEEDEQLKMLVRHYGQNDWKFLASHFPN-RSDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNH 128          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.546e-22
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   90 EKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWH 395
            +K  L KG WT EED++LI  ++ YG   W  +  Q    R GK CR RW N+LRPDIK+  ++ EE+  +I  H+ +GN+W+ IA RLPGRT+N IKN W+
Sbjct:  211 KKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIA-QVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWN 311          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.244e-22
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  +Q YG   W  + K     R GK CR RW N+L P++K+ ++T  E+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNS 182          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.461e-22
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  ++ YG   W  + K     R GK CR RW N+L P++K+  +T EE+  I   H++LGNRW+ IA  LPGRTDN +KN W++
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNS 178          

HSP 2 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  108 KGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNR-WSAIAARLPGRTDNEIKNVWHTH 401
            K  WT EED+ L   ++ +G  +W+ L       R  + C+ RW+  L PD+ +G +T+EE+  +I L +  G + W+ IA  L GR   + +  WH H
Sbjct:   31 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNH 128          
The following BLAST results are available for this feature:
BLAST of CF832466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYBA_HUMAN1.906e-2250.51Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBA_XENLA2.490e-2249.49Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYB_MOUSE3.252e-2250.51Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN3.252e-2250.51Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK3.252e-2250.51Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN3.252e-2250.51Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBB_CHICK3.252e-2248.48Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYB98_ARATH5.546e-2248.04Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYBA_CHICK7.244e-2249.49Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYBB_MOUSE9.461e-2248.48Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832466 ID=CF832466; Name=CF832466; organism=Citrus sinensis; type=EST; length=765bp
CAAAAAATTTGATCTTAGAGAATTAAAAAGATACATAGCAAAGTTAAATA
TACTGCGGTGGTCCGAAAATGGTGAGAGCTCCATGCTGCGAGAAGATGGG
ATTGAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAATTTTAATCAATT
ACATTCAACTTTATGGCCATGGCAACTGGCGGGCACTTCCCAAACAAGCA
GGTTTATTAAGATGTGGAAAGAGTTGCCGGCTCCGGTGGATAAATTACTT
GCGGCCGGATATTAAACGGGGAAATTTCACCAGAGAAGAAGAGGACACTA
TCATCAACCTACATGAAATGCTCGGAAATAGATGGTCAGCAATCGCAGCA
AGACTTCCGGGAAGAACGGACAACGAAATTAAAAATGTTTGGCACACTCA
CTTGAAAAAGCGTCTCAAGCAAAAGCAACAACAAGAGCCCGTGATTAATA
ATCATAGTAACGCTAATCATGTTACGGCGAGATCCGAGATCTGCAGCGGC
GCCAGTACTCCCGATCGGCAAGACTCGACTACTACTTCAAGCGACATGTC
GTCCGTCACCTCCTCCGCGGCTAATAACGCTTGCGTGAAAACAGAGCCGT
CGTCGTCCGAAAACAATCACGACAGCTTGGTTGAAATAGATGAGAATTTT
TGGACGGAAGTGTTGTCGGCTGAGAACTCGGGCATTAGTATTGAGGACAG
CAATGATCGTTTTTCAGCGGTTGGAGGCGCCGACCCACTGTCTATAGTTG
AATTTTCATCATCAC
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