CF832466

Overview
NameCF832466
Unique NameCF832466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2932 contig Csv1_Contig2932:262..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.461e-22
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT EEDQ +I  ++ YG   W  + K     R GK CR RW N+L P++K+  +T EE+  I   H++LGNRW+ IA  LPGRTDN +KN W++
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNS 178          

HSP 2 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  108 KGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNR-WSAIAARLPGRTDNEIKNVWHTH 401
            K  WT EED+ L   ++ +G  +W+ L       R  + C+ RW+  L PD+ +G +T+EE+  +I L +  G + W+ IA  L GR   + +  WH H
Sbjct:   31 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNH 128          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.366e-20
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  108 KGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            KGPW+PEED+ L   +  YG  NW  + K     R GKSCRLRW N L P ++   F+ EE++TI   H   GN+W+ IA  L GRTDN +KN W++
Sbjct:    6 KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNS 101          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPWT +ED ++I  ++ +G   W  + +     R GK CR RW N+L P+IK+  +T +E++ I   H  LGN+W+ IA RLPGRTDN IKN W++
Sbjct:  134 LIKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLNG-RIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNS 231          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KGPW+ EED  +I+ ++ YG   W  + +     R GK CR RW N+L P I +  +T+EEE T+I  H++ GN+W+ +   LPGR+DN IKN W++
Sbjct:   85 LVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPG-RIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNS 182          

HSP 2 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  108 KGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTH 401
            KG WTPEED++L   ++ +   NW+ +  +    R    C  RW   L P++ +G +++EE++TII+L E  G  +WS I+  LPGR   + +  WH H
Sbjct:   35 KGQWTPEEDEVLCKAVERFQGKNWKKIA-ECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNH 132          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.346e-18
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 3
Query:   99 GLKKGPWTPEEDQILINYIQLYGHGNWRALP-KQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            G+ KGPW  EED  L+  +   G   W ++  K  G  R GK CR RW N+L P++++ N+T EE+  II+ H  LGN+W+AI+  L GR  N IKN W++
Sbjct:  274 GIVKGPWKDEEDAKLVELVNKCGPKEWSSIAAKIPG--RIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNS 372          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.016e-17
Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = 3
Query:   75 RAPCCEKMGLKK--------------GPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            ++P  +K GLKK              G WT EED+ L + + L+G   W+ +      LR G+ CR RW N L P IKR  +T EE+  I++ H   GN+W+ I+  LPGRT+  IKN W++
Sbjct:  732 KSPAVKKSGLKKSGRSKSSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLL-CLRNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNS 852          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.163e-17
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 398
            L KG WT +ED  +I  ++ YG   W  +       R GK CR RW N+L P+IK+  ++ EE+  I + H + GN+W+ IA  LPGRTDN IKN W++
Sbjct:  199 LVKGAWTKDEDDKVIELVKTYGPKKWSDIALHLKG-RMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNS 296          

HSP 2 Score: 72.0182 bits (175), Expect = 3.984e-12
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 3
Query:  108 KGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTH 401
            KG WT EEDQILI  + L+   NW+ + +     R    C  R+   L P++ +G +T++E+D +I L +  G  +WS IA  L GR   + +  WH H
Sbjct:  149 KGKWTSEEDQILIKAVNLHNQKNWKKIAEHFP-DRTDVQCHHRYQKVLHPNLVKGAWTKDEDDKVIELVKTYGPKKWSDIALHLKGRMGKQCRERWHNH 246          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.666e-16
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  117 WTPEEDQILINYIQLYGHGNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVW 392
            W PEED IL+ Y++ YG   W  + ++    L R  KSC  RW NYLRP IK+G+ T +E+  +I L    GN+W  IAA +PGRT   +   W
Sbjct:   12 WRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWW 105          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.666e-16
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  117 WTPEEDQILINYIQLYGHGNWRALPKQ--AGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVW 392
            W PEED +L  Y++ YG   W  + ++    L R  KSC  RW NYLRP IK+G+ T EE+  +I L    GN+W  IAA +PGRT   +   W
Sbjct:    7 WRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  117 WTPEEDQILINYIQLYGHGNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVW 392
            W+ EED +L  Y++ +G   W  + ++    L R  KSC  RW NYL+P IK+G+ T EE+  +I L E  GN+W  IAA +PGRT   +   W
Sbjct:    7 WSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWW 100          
The following BLAST results are available for this feature:
BLAST of CF832466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYBB_HUMAN9.461e-2248.48Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYB44_ARATH1.366e-2047.42Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYB_DROME1.156e-1945.45Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MB3R1_ARATH1.973e-1943.43Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
MYBQ_DICDI6.346e-1843.56Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYBAA_DICDI7.016e-1738.52Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYBA_DICDI9.163e-1743.43Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
RS2_ORYSJ2.666e-1643.62Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE2.666e-1643.62Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
AS1_ARATH2.948e-1541.49Transcription factor AS1 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832466 ID=CF832466; Name=CF832466; organism=Citrus sinensis; type=EST; length=765bp
CAAAAAATTTGATCTTAGAGAATTAAAAAGATACATAGCAAAGTTAAATA
TACTGCGGTGGTCCGAAAATGGTGAGAGCTCCATGCTGCGAGAAGATGGG
ATTGAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAATTTTAATCAATT
ACATTCAACTTTATGGCCATGGCAACTGGCGGGCACTTCCCAAACAAGCA
GGTTTATTAAGATGTGGAAAGAGTTGCCGGCTCCGGTGGATAAATTACTT
GCGGCCGGATATTAAACGGGGAAATTTCACCAGAGAAGAAGAGGACACTA
TCATCAACCTACATGAAATGCTCGGAAATAGATGGTCAGCAATCGCAGCA
AGACTTCCGGGAAGAACGGACAACGAAATTAAAAATGTTTGGCACACTCA
CTTGAAAAAGCGTCTCAAGCAAAAGCAACAACAAGAGCCCGTGATTAATA
ATCATAGTAACGCTAATCATGTTACGGCGAGATCCGAGATCTGCAGCGGC
GCCAGTACTCCCGATCGGCAAGACTCGACTACTACTTCAAGCGACATGTC
GTCCGTCACCTCCTCCGCGGCTAATAACGCTTGCGTGAAAACAGAGCCGT
CGTCGTCCGAAAACAATCACGACAGCTTGGTTGAAATAGATGAGAATTTT
TGGACGGAAGTGTTGTCGGCTGAGAACTCGGGCATTAGTATTGAGGACAG
CAATGATCGTTTTTCAGCGGTTGGAGGCGCCGACCCACTGTCTATAGTTG
AATTTTCATCATCAC
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