CF832466

Overview
NameCF832466
Unique NameCF832466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2932 contig Csv1_Contig2932:262..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB1_NEUCR (Myb-like DNA-binding protein myb-1 OS=Neurospora crassa GN=rca-1 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.567e-15
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  105 KKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWH 395
            ++GPW+  EDQ LI  ++  G GNW  + +  G  R  K CR RW   L+P +  G  T+EE   I+   ++ G RW+ IA +L GR+DN +KN W+
Sbjct:    8 RRGPWSAGEDQRLIKLVKDLGPGNWVNVARILGT-RTPKQCRERWHQNLKPGLNHGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNYWN 103          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.203e-12
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 3
Query:   99 GLKKGP--WTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTD 371
            G+++ P  WT EEDQ L   + +YG   W+ +  + G  + G  C   W   L PDI++G +  +EE+ ++ L    G+ W  IA R+  RTD
Sbjct:   62 GIRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTD 154          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBL_DICDI (Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.796e-12
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 3
Query:  102 LKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVW 392
            +KKG W+PEEDQ LIN +  YG GNW  L K     R    CR R+ N L P + +  +T +E+  + ++   +G  +WS +A  +  RTDN+    W
Sbjct:  650 IKKGRWSPEEDQCLINAVNAYGKGNW-ILIKNHVKGRTDVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDNQCWRRW 746          
The following BLAST results are available for this feature:
BLAST of CF832466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB1_NEUCR6.567e-1540.21Myb-like DNA-binding protein myb-1 OS=Neurospora c... [more]
MYBM_DICDI5.203e-1234.41Myb-like protein M OS=Dictyostelium discoideum GN=... [more]
MYBL_DICDI6.796e-1237.76Myb-like protein L OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832466 ID=CF832466; Name=CF832466; organism=Citrus sinensis; type=EST; length=765bp
CAAAAAATTTGATCTTAGAGAATTAAAAAGATACATAGCAAAGTTAAATA
TACTGCGGTGGTCCGAAAATGGTGAGAGCTCCATGCTGCGAGAAGATGGG
ATTGAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAATTTTAATCAATT
ACATTCAACTTTATGGCCATGGCAACTGGCGGGCACTTCCCAAACAAGCA
GGTTTATTAAGATGTGGAAAGAGTTGCCGGCTCCGGTGGATAAATTACTT
GCGGCCGGATATTAAACGGGGAAATTTCACCAGAGAAGAAGAGGACACTA
TCATCAACCTACATGAAATGCTCGGAAATAGATGGTCAGCAATCGCAGCA
AGACTTCCGGGAAGAACGGACAACGAAATTAAAAATGTTTGGCACACTCA
CTTGAAAAAGCGTCTCAAGCAAAAGCAACAACAAGAGCCCGTGATTAATA
ATCATAGTAACGCTAATCATGTTACGGCGAGATCCGAGATCTGCAGCGGC
GCCAGTACTCCCGATCGGCAAGACTCGACTACTACTTCAAGCGACATGTC
GTCCGTCACCTCCTCCGCGGCTAATAACGCTTGCGTGAAAACAGAGCCGT
CGTCGTCCGAAAACAATCACGACAGCTTGGTTGAAATAGATGAGAATTTT
TGGACGGAAGTGTTGTCGGCTGAGAACTCGGGCATTAGTATTGAGGACAG
CAATGATCGTTTTTCAGCGGTTGGAGGCGCCGACCCACTGTCTATAGTTG
AATTTTCATCATCAC
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