CF832467

Overview
NameCF832467
Unique NameCF832467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12113 contig Csv1_Contig12113:188..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PATM2_SOLTU (Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.578e-33
Identity = 87/215 (40.47%), Postives = 127/215 (59.07%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAP Y PPHY  T  S+ G    F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +   S + D+++S +FQ+  S++NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR
Sbjct:  184 CYSTAAAPIYFPPHYFITHTSN-GDIYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PATM1_SOLTU (Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.578e-33
Identity = 87/215 (40.47%), Postives = 127/215 (59.07%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAP Y PPHY  T  S+ G    F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +   S + D+++S +FQ+  S++NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR
Sbjct:  184 CYSTAAAPIYFPPHYFITHTSN-GDIYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PAT14_SOLTU (Patatin-14 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.578e-33
Identity = 87/215 (40.47%), Postives = 127/215 (59.07%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAP Y PPHY  T  S+ G    F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +   S + D+++S +FQ+  S++NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR
Sbjct:  184 CYSTAAAPIYFPPHYFITHTSN-GDIYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PAT12_SOLTU (Patatin-12 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.578e-33
Identity = 87/215 (40.47%), Postives = 127/215 (59.07%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAP Y PPHY  T  S+ G    F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +   S + D+++S +FQ+  S++NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR
Sbjct:  185 CYSTAAAPIYFPPHYFITHTSN-GDIYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWMLA-----IRQMTNAASSYMADYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLR 381
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PATD3_SOLTU (Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.397e-33
Identity = 86/216 (39.81%), Postives = 129/216 (59.72%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSD-IVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL+IS ++  + +++P F     ++ + ML+LSLGTGT  + +  Y A + +KWG  +W+       ++   +D  S  + D+++S +FQ+  S+ NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR
Sbjct:  185 CYSTAAAPTYFPPHYFTT-NTINGDKYEFNLVDGAVATVADPALLSIS-VATRLAEKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAEETAKWGAIQWML------VIQRMTDAASSYMTDYYLSTVFQAQNSQKNYLRVQENALTGTTTEMDDASEANMESLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLR 381
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PATD2_SOLTU (Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.397e-33
Identity = 86/216 (39.81%), Postives = 129/216 (59.72%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSD-IVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL+IS ++  + +++P F     ++ + ML+LSLGTGT  + +  Y A + +KWG  +W+       ++   +D  S  + D+++S +FQ+  S+ NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR
Sbjct:  185 CYSTAAAPTYFPPHYFTT-NTINGDKYEFNLVDGAVATVADPALLSIS-VATRLAEKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAEETAKWGAIQWML------VIQRMTDAASSYMTDYYLSTVFQAQNSQKNYLRVQENALTGTTTEMDDASEANMESLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLR 381
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PAT10_SOLTU (Patatin-10 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.397e-33
Identity = 87/215 (40.47%), Postives = 126/215 (58.60%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAP Y PPHY  T  S+ G    F+LVDGGVA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +   S + D+++S +FQ+  S++NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS + KLR
Sbjct:  184 CYSTAAAPIYFPPHYFITHTSN-GDIYEFNLVDGGVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAQEAAKWGPLRWMLA-----IQQMTNAASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSNRKKLR 380
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PAT08_SOLTU (Patatin-08 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.397e-33
Identity = 86/216 (39.81%), Postives = 129/216 (59.72%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSD-IVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL+IS ++  + +++P F     ++ + ML+LSLGTGT  + +  Y A + +KWG  +W+       ++   +D  S  + D+++S +FQ+  S+ NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR
Sbjct:  185 CYSTAAAPTYFPPHYFTT-NTINGDKYEFNLVDGAVATVADPALLSIS-VATRLAEKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAEETAKWGAIQWML------VIQRMTDAASSYMTDYYLSTVFQAQNSQKNYLRVQENALTGTTTEMDDASEANMESLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLR 381
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PT2K1_SOLTU (Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.743e-33
Identity = 86/215 (40.00%), Postives = 126/215 (58.60%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAP Y PPHY  T  S+ G    F+LVDG VA   +P LL++S ++  + +++P F     +D + ML+LSLGTGT  + +  Y A +A+KWG   W+       I  + +   S + D+++S +FQ+  S++NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR
Sbjct:  172 CYSTAAAPIYFPPHYFVTHTSN-GDRYEFNLVDGAVATVGDPALLSLS-VATRLAQEDPAFSSIKSLDYKQMLLLSLGTGTNSEFDKTYTAEEAAKWGPLRWLLA-----IQQMTNAASSYMTDYYLSTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLR 368
[Close]
BLAST of CF832467 vs. ExPASy Swiss-Prot
Match: PT2K4_SOLTU (Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.501e-33
Identity = 86/215 (40.00%), Postives = 127/215 (59.07%), Query Frame = -2 
Query:  162 CISTFAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVAA-NNPTLLAISHISKEMVKQNPQFRDKNPMDGRDMLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDGNTPILDIYSDGGSDIVDFHMSALFQSCGSKDNYLRIQDDTLSGDAASADIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLR 800
            C ST AAP Y PPHY  T  S+ G    F+LVDGGVA   +P LL++S ++ ++ + +P+F     +D + ML+LSLGTGT  + +  Y A + +KWG   W+       I  + +   S + D+++S +FQ+  S++NYLR+Q++ L+G     D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR
Sbjct:  172 CYSTAAAPIYFPPHYFVTHTSN-GDRYEFNLVDGGVATVGDPALLSLS-VATKLAQVDPKFASIKSLDYKQMLLLSLGTGTNSEFDKTYTAQETAKWGPLRWMLA-----IQQMTNAASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLR 368
The following BLAST results are available for this feature:
BLAST of CF832467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PATM2_SOLTU2.578e-3340.47Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1[more]
PATM1_SOLTU2.578e-3340.47Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1[more]
PAT14_SOLTU2.578e-3340.47Patatin-14 OS=Solanum tuberosum PE=2 SV=1[more]
PAT12_SOLTU2.578e-3340.47Patatin-12 OS=Solanum tuberosum PE=2 SV=1[more]
PATD3_SOLTU4.397e-3339.81Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1[more]
PATD2_SOLTU4.397e-3339.81Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1[more]
PAT10_SOLTU4.397e-3340.47Patatin-10 OS=Solanum tuberosum PE=2 SV=1[more]
PAT08_SOLTU4.397e-3339.81Patatin-08 OS=Solanum tuberosum PE=2 SV=1[more]
PT2K1_SOLTU5.743e-3340.00Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 ... [more]
PT2K4_SOLTU7.501e-3340.00Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832467 ID=CF832467; Name=CF832467; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTATTTAATAGTAATAATCTTATTAATTCCCCCTTTC
CAATTGGAAGCACTTTTGAGTCGGATTGATTACACCTAAAAACACGCATG
CGGAATCCTTATGCCTTACTCAAATAAAACGAGTTTCAAATTAAAAGACT
TATTGGCGGCGGCGGAGCTTAAGTTGTTCAGAGAGTAATTTGGCAAAGTG
AGCAAGTGCTTCTTCATTTGTGACCTCTCCGTCAACCTTCTCATATCTGC
CAGTCTCCAGGTTCACCCTCGACACCTGCTCCTTCAACAACTTGGTTCCA
GTTTCCACAAGCCTTTGCATATTCTCCTCCGTGGCAATGTCAGCAGATGC
TGCATCACCACTCAACGTGTCGTCCTGAATTCGAAGGTAGTTGTCCTTGC
TTCCGCAGGATTGAAAGAGAGCAGACATATGGAAATCAACAATATCGGAG
CCTCCATCAGAGTAGATGTCGAGTATTGGGGTATTGCCATCTTCATAGAT
CCATTCGAAAATGCCCCACTTGGAGGCTTTGGCTGCATTGTACTTCAATT
CTTTCTTGGCTGTACCTGTGCCTAGTGATAGTACCAGCATATCTCTACCG
TCCATTGGGTTTTTGTCCCTGAACTGGGGGTTCTGCTTCACCATTTCCTT
CGATATGTGGCTTATTGCCAATAGGGTAGGGTTATTGGCAGCAACTCCGC
CATCAACAAGATCAAAAGTGCGGGTTCCGCCACTGTCACTGTCCTTAGTC
TCCAAGTAATGAGGTGGGAGGTAAGTGGGCGCTGCAAAAGTGCTGATGCA
T
back to top