CF832468

Overview
NameCF832468
Unique NameCF832468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PAT08_SOLTU (Patatin-08 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.016e-41
Identity = 96/214 (44.86%), Postives = 131/214 (61.21%), Query Frame = 1 
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T+M+T PN+   PF AA +I  F+ EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQENLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYF-TTNTINGDKYEFNLVDGAVATVADPALL 228
[Close]
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PATA2_SOLTU (Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.939e-41
Identity = 96/214 (44.86%), Postives = 129/214 (60.28%), Query Frame = 1 
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AA +I  FY EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC S +AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSAAAAPTYFPPHYFAT-NTINGDKYEFNLVDGAVATVADPALL 228
[Close]
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PATD3_SOLTU (Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.497e-40
Identity = 95/214 (44.39%), Postives = 130/214 (60.75%), Query Frame = 1 
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T+M+T PN+   PF AA +I  F+ EHGP IF             +S   +  GPKYDGKYL  ++ E LG+  V + LT V I + DIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTY PPHY  T ++ +G    F+LVDG VA   +P LL
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIF-------------NSSTGQFFGPKYDGKYLMQVLQENLGETRVHQALTEVAISSLDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYF-TTNTINGDKYEFNLVDGAVATVADPALL 228
[Close]
BLAST of CF832468 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.288e-39
Identity = 94/214 (43.93%), Postives = 126/214 (58.88%), Query Frame = 1 
Query:  112 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYLPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLL 747
            +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF AA +I  FY EHGP IF   +   F               KYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPTY PPHY  T ++ +G     +LVDG VA   +P LL
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFFR--------------KYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT-NTINGDKYELNLVDGAVATVADPALL 227
The following BLAST results are available for this feature:
BLAST of CF832468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PAT08_SOLTU3.016e-4144.86Patatin-08 OS=Solanum tuberosum PE=2 SV=1[more]
PATA2_SOLTU3.939e-4144.86Patatin group A-2 OS=Solanum tuberosum PE=2 SV=1[more]
PATD3_SOLTU1.497e-4044.39Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT16_SOLTU6.288e-3943.93Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832468 ID=CF832468; Name=CF832468; organism=Citrus sinensis; type=EST; length=749bp
TAATTTCGAATCCTAATAGCTGCTCAATCTGATCGTACTTCTTTTTAACT
TCAAGAAGCTCTTTCAATTTGAAATAAAATGGCCACTGCCGGTTCTGCAG
AAGGAAAGAAAATAACAGTTCTGAGCATCGATGGAGGTGGCATTCGAGGC
ATTATTCCTGGCACTATTTTAGCTTTTCTTGAATCCAAGCTCCAGGAATT
GGATGGACCAAGTGCAAGAATTGCAGATTATTTTGATGTAGTAGCAGGAA
CAAGCACCGGCGGATTGGTAACCACCATGCTTACGGCACCCAACAAGGAA
GGCGGACCTTTCATTGCTGCAAAGGATATCAATAATTTTTATCTCGAGCA
CGGTCCTAAAATTTTCCCTCAAATTAGCCGCAGCAACTTCTCGGAATCGA
TTGCAAGCTCTATCGATAAACGGCTGCTTGGACCAAAGTATGATGGGAAG
TACCTGCGGGCACTAGTGAACGAGCTACTAGGAGACGTTACTGTGAAAGA
GACTCTTACCAACGTGGTTATACCAACTTTTGACATAAAGCTTCTTCAGC
CAGTCATCTTCTCAACCACCGATGGAAAAGAGAACGTTTTGAAGAATGCT
CGGCTGGCTGATATATGCATCAGCACTTCTGCAGCGCCCACTTACCTCCC
ACCTCACTACTTGGAGACTAAGGACAGTGACAGTGGCGGAACCCGCACTT
TTGATCTTGTTGATGGCGGAGTTGCTGCCAATAACCCTACCCTATTGGC
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