CF832470

Overview
NameCF832470
Unique NameCF832470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_ASPOR (Nascent polypeptide-associated complex subunit beta OS=Aspergillus oryzae GN=egd1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++DD+D++P+LV
Sbjct:  114 KVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDDEDDIPDLV 186          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BT3L4_CHICK (Transcription factor BTF3 homolog 4 OS=Gallus gallus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPEL 236
            F N KVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++        +++DD+VP+L
Sbjct:   69 FNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKSEDIDEEDDDVPDL 145          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_ASPTN (Nascent polypeptide-associated complex subunit beta OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=egd1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 35/78 (44.87%), Postives = 56/78 (71.79%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N +V AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++D++D++P+LV
Sbjct:   81 FGNPRVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDEEDDIPDLV 157          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_SCLS1 (Nascent polypeptide-associated complex subunit beta OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=egd1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G       E+DDD++P+LV
Sbjct:   76 KVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKAEGGEEKKDDEEDDDDIPDLV 149          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_COCIM (Nascent polypeptide-associated complex subunit beta OS=Coccidioides immitis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KVQAS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G  A    E+DD+++P+LV
Sbjct:   74 KVQASVPSNTFAIYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKKEGE-AKKEGEEDDEDIPDLV 146          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_PHANO (Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED--DDDEVPELV 239
            KV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G       +D  DDD++PELV
Sbjct:   73 KVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKEKGEDGDKKDDDDEDDDDIPELV 148          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_NEOFI (Nascent polypeptide-associated complex subunit beta OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 34/74 (45.95%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q     AGT     +++D+D++P+LV
Sbjct:  102 KVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQAGTEG--KKDEDEDDIPDLV 173          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_ASPNC (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 34/74 (45.95%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++D++D++P+LV
Sbjct:   73 KVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGADGKKDDEEDDIPDLV 145          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_EMENI (Nascent polypeptide-associated complex subunit beta OS=Emericella nidulans GN=egd1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 34/75 (45.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:   15 LKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            +KV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N    A   ++DD+D++P+LV
Sbjct:   84 IKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ---AGEKKDDDEDDIPDLV 155          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_ASPFU (Nascent polypeptide-associated complex subunit beta OS=Aspergillus fumigatus GN=egd1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 34/74 (45.95%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q     A  GA   +++D+D++P+LV
Sbjct:  105 KVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQA--GAEGKKDEDEDDIPDLV 176          
The following BLAST results are available for this feature:
BLAST of CF832470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NACB_ASPOR4.117e-1347.30Nascent polypeptide-associated complex subunit bet... [more]
BT3L4_CHICK4.117e-1345.45Transcription factor BTF3 homolog 4 OS=Gallus gall... [more]
NACB_ASPTN7.023e-1344.87Nascent polypeptide-associated complex subunit bet... [more]
NACB_SCLS19.172e-1344.59Nascent polypeptide-associated complex subunit bet... [more]
NACB_COCIM9.172e-1347.30Nascent polypeptide-associated complex subunit bet... [more]
NACB_PHANO1.198e-1246.05Nascent polypeptide-associated complex subunit bet... [more]
NACB_NEOFI1.198e-1245.95Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPNC1.198e-1245.95Nascent polypeptide-associated complex subunit bet... [more]
NACB_EMENI2.043e-1245.33Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPFU2.043e-1245.95Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832470 ID=CF832470; Name=CF832470; organism=Citrus sinensis; type=EST; length=619bp
TTCAGTTCTTAAATCTCAAAGTACAAGCTTCAATTGCTGCCAACACATGG
GTAGTTAGTGGTGCCCCACAAACCAAGAAGTTGCAGGATATTCTCCCTGG
AATTATCAATCAATTGGGGCCAGATAATTTGGACAACCTGAGGAAGTTGG
CGGAGCAGTTTCAGAAGCAAGCACCTAATGCAGGAACTGGTGCACCCACG
ACTCAAGAGGACGACGACGATGAGGTCCCAGAGCTTGTGGCAGGCGAGAC
GTTTGAAGCTGCCGCAGAGGAGAAAACAGAGAAACCTGACGCTGCTTCTT
AGAGAGTTTTATCTAGAGGGACTTTGTGTTATTCTATATATTTTCTATGT
TTTTTGAGCTTTTATTTTACTTTTCCGAGTCAACTTTCTCTTGTTTTATC
TGATTCTCCCTGTGACACTAGATATTGTTACTTTTAATTCAATGTTTTGC
TCCAGTGAAACCAGTGAAAACCTTTTTACTCTTTCAGAATCTGGAGGCAC
TGTTGCAATGGCTTTCTATTGTGCATTTTGTTGTAAGTCTGATGTCGTCG
GATCGGTTGCTCTTCAATGAAACAGGCGGCTAAATATTTTGCCTGTATTT
CNNAAAAAAAAAAAAAAAA
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