CF832470

Overview
NameCF832470
Unique NameCF832470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:329..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_BOTFB (Nascent polypeptide-associated complex subunit beta OS=Botryotinia fuckeliana (strain B05.10) GN=egd1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 32/74 (43.24%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G       ++DDD++P+LV
Sbjct:   76 KVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKAEGGEDKKDDDEDDDDIPDLV 149          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_ASPCL (Nascent polypeptide-associated complex subunit beta OS=Aspergillus clavatus GN=egd1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q     +  GA   +++D+D++P+LV
Sbjct:   82 KVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNM-QKSQAGAEGKKDEDEDDIPDLV 154          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_CRYNE (Nascent polypeptide-associated complex subunit beta OS=Cryptococcus neoformans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 3
Query:   15 LKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK--------QAPNAGTGAPTTQE-DDDDEVPELV 239
            ++V A++ +NT  + G  QTK+L +++PGI+NQLGPD+L NLR+LAE +Q          A + G GA   +E + DDE+P+LV
Sbjct:   75 VQVHAALPSNTLAIYGPGQTKELTELVPGILNQLGPDSLANLRRLAESYQSLTARQAAAAAGSGGEGAGEAKEGEGDDEIPDLV 158          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_MAGGR (Nascent polypeptide-associated complex subunit beta OS=Magnaporthe grisea GN=EGD1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV A++ ANT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G      +E DDD++P+LV
Sbjct:   75 KVHAAVPANTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNMQKADG-----DKEADDDDIPDLV 143          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_CHAGB (Nascent polypeptide-associated complex subunit beta OS=Chaetomium globosum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q             ++DDDDE+P+LV
Sbjct:   76 KVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNM---------QQKKDDDDEIPDLV 140          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_GIBZE (Nascent polypeptide-associated complex subunit beta OS=Gibberella zeae GN=EGD1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            KV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G        +DDDE+P+LV
Sbjct:   85 KVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNLQKEKG--------EDDDEIPDLV 150          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BT3L3_HUMAN (Transcription factor BTF3 homolog 3 OS=Homo sapiens GN=BTF3L3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPEL 236
            F N K QAS+A NT+ ++G  + K++ ++LP +++QLG D+L +LR+LAE   KQ P  G     T  DDDD VPEL
Sbjct:  104 FNNPKFQASLAVNTFTITGHAEAKQVTEMLPSVLSQLGADSLTSLRRLAEVLPKQ-PVDGKAPLATGGDDDDGVPEL 179          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BTF3_CAEEL (Transcription factor BTF3 homolog OS=Caenorhabditis elegans GN=icd-1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQ S+ ANT+ V+G+   K++ ++LPGI+NQLGP++L +L+KLA    K  P+         + +D++VPELV
Sbjct:   76 FNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLKKLANNVTKLGPDG--------KGEDEDVPELV 145          
The following BLAST results are available for this feature:
BLAST of CF832470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NACB_BOTFB2.669e-1243.24Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPCL4.552e-1244.59Nascent polypeptide-associated complex subunit bet... [more]
NACB_CRYNE7.765e-1244.05Nascent polypeptide-associated complex subunit bet... [more]
NACB_MAGGR1.324e-1145.95Nascent polypeptide-associated complex subunit bet... [more]
NACB_CHAGB1.730e-1144.59Nascent polypeptide-associated complex subunit bet... [more]
NACB_GIBZE2.951e-1144.59Nascent polypeptide-associated complex subunit bet... [more]
BT3L3_HUMAN2.951e-1146.75Transcription factor BTF3 homolog 3 OS=Homo sapien... [more]
BTF3_CAEEL5.033e-1143.59Transcription factor BTF3 homolog OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832470 ID=CF832470; Name=CF832470; organism=Citrus sinensis; type=EST; length=619bp
TTCAGTTCTTAAATCTCAAAGTACAAGCTTCAATTGCTGCCAACACATGG
GTAGTTAGTGGTGCCCCACAAACCAAGAAGTTGCAGGATATTCTCCCTGG
AATTATCAATCAATTGGGGCCAGATAATTTGGACAACCTGAGGAAGTTGG
CGGAGCAGTTTCAGAAGCAAGCACCTAATGCAGGAACTGGTGCACCCACG
ACTCAAGAGGACGACGACGATGAGGTCCCAGAGCTTGTGGCAGGCGAGAC
GTTTGAAGCTGCCGCAGAGGAGAAAACAGAGAAACCTGACGCTGCTTCTT
AGAGAGTTTTATCTAGAGGGACTTTGTGTTATTCTATATATTTTCTATGT
TTTTTGAGCTTTTATTTTACTTTTCCGAGTCAACTTTCTCTTGTTTTATC
TGATTCTCCCTGTGACACTAGATATTGTTACTTTTAATTCAATGTTTTGC
TCCAGTGAAACCAGTGAAAACCTTTTTACTCTTTCAGAATCTGGAGGCAC
TGTTGCAATGGCTTTCTATTGTGCATTTTGTTGTAAGTCTGATGTCGTCG
GATCGGTTGCTCTTCAATGAAACAGGCGGCTAAATATTTTGCCTGTATTT
CNNAAAAAAAAAAAAAAAA
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