CF832474

Overview
NameCF832474
Unique NameCF832474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_NOCSJ (S-adenosylmethionine synthetase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=metK PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.105e-54
Identity = 118/221 (53.39%), Postives = 144/221 (65.16%), Query Frame = 2
Query:   89 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI------GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 733
            LFTSESV EGHPDK+ DQISD+VLDA LE DP S+VA ET   T +V+V GE+TT   VD + +VR     IG+ S   G D   C V+V I  QS DIAQGV      R   +      GAGDQG MFGYA D+T   MPL  V+A +L  +LT VRK+ T  +LRPDGKTQVT+EY  +N    PVRV TV++S+QHDE    D + AD+K+HVI PV+
Sbjct:    5 LFTSESVTEGHPDKIADQISDSVLDAMLELDPTSRVAVETLLTTGVVVVAGEVTTTGYVDVKDVVRRRIIEIGYDSSVKGFDGHSCGVMVAIGGQSGDIAQGVDTGHESRTGSVDAMDKQGAGDQGLMFGYACDDTDVLMPLPIVIAQRLAEQLTAVRKDGTLPYLRPDGKTQVTIEYDAENR---PVRVDTVVLSSQHDEDTELDTLEADVKKHVIDPVL 222          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_LEIXX (S-adenosylmethionine synthetase OS=Leifsonia xyli subsp. xyli GN=metK PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.105e-54
Identity = 117/222 (52.70%), Postives = 144/222 (64.86%), Query Frame = 2
Query:   89 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPE----DI---GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 733
            LFTSESV EGHPDK+CDQISD++LDA L  D  S+VA ET   T +V V GE+TTK  V+   +VRDT   IG+ S DV  D   C V V+I  QSPDIAQGV      R E    D+   GAGDQG MFG+AT ETP++MPL   LA +L  RL  VRK+ T  +LRPDGKTQVT+ Y       VP  V TV++STQH   + + ++ AD+ E VI+PV+
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLAVDEHSRVAVETLVTTGLVHVAGEVTTKGYVEIPALVRDTIVEIGYDSSDVSFDGTQCGVSVSIGAQSPDIAQGVDNALETRSERSQDDLDRQGAGDQGIMFGFATTETPQYMPLPIWLAHRLAERLAAVRKDGTLGYLRPDGKTQVTIGY----EGYVPKSVQTVVLSTQHARDIPSQQLRADVIEQVIEPVM 223          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_XANCP (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris GN=metK PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.189e-53
Identity = 112/226 (49.56%), Postives = 148/226 (65.49%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVR--KNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 748
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S DVG D + C VL  I +QSPDI QGV     K PE  GAGDQG MFGYAT+ET  +MP +  L+ +L  +  ++R  KNS  SWLRPD K+QVT+ Y +     V   +  V++ST HD  V   ++   ++E ++KPV+P K+L
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSALSWLRPDAKSQVTLRYEDG----VATAIDAVVLSTHHDPGVKQKDLIEAVREEILKPVLPAKWL 219          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_BORPD (S-adenosylmethionine synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metK PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.189e-53
Identity = 114/221 (51.58%), Postives = 144/221 (65.16%), Query Frame = 2
Query:   86 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI---GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE 739
            FLFTSESV+EGHPDK+ DQISDA+LDA   QDP ++VA ET   T +V++ GEITT A VDY ++ RDT R IG+ + D G+D   C VLV  ++QSPDIAQGV     ++ ED    GAGDQG MFGYA DETP+ MP     A +L  R +E+RK+    WLRPD K+QVT  Y +      PV V TV++STQH   ++   I   + E +IKP  PE
Sbjct:    6 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV----DRKSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PVEVDTVVLSTQHAPEISQSAIHEAVIEDIIKPSFPE 218          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_THEEB (S-adenosylmethionine synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=metK PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.553e-53
Identity = 115/233 (49.36%), Postives = 149/233 (63.95%), Query Frame = 2
Query:   86 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPVIPE 739
            +LF+SESV EGHPDK+CDQI+DA+LDA L QDP+S+VA E    T +V++ GEITTKA+V+Y  + R     IG+   + G  A+ C VLV +++QSPDIA+GV      R        + IGAGDQG MFGYA +ETPE+MPL   LA ++  RL  VRK     +LRPDGKTQVTV Y +      PV + T+LISTQH        +E+    +I ADL E V+KPV  +
Sbjct:    3 YLFSSESVTEGHPDKICDQIADAILDALLTQDPQSRVAAEVVVNTGLVLITGEITTKAQVNYVNLARQKIHEIGYTDANNGFAANSCAVLVALDEQSPDIARGVDTAQEAREQLSDAELDRIGAGDQGIMFGYACNETPEYMPLPISLAHRMARRLAAVRKTGQLPYLRPDGKTQVTVIYEDGK----PVGIDTILISTQHTATIDDISEESAVQAKIKADLWEAVVKPVFAD 231          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_STRGG (S-adenosylmethionine synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metK PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.553e-53
Identity = 118/229 (51.53%), Postives = 146/229 (63.76%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPE-------DIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE 739
            M   LFTSESV EGHPDK+ DQISD +LDA L +DP S+VA ET   T +V V GE+TTKA  D   +VR+    IG+ S   G D   C V V+I  QSPDIAQGV   + KR E         GAGDQG MFGYA DETPE MPL   +A +L  RL+EVRKN T  +LRPDGKTQVT+EY  D      VR+ TV++S+QH   +  D  +A D++E V++ V+ +
Sbjct:    1 MSRRLFTSESVTEGHPDKIADQISDTILDALLREDPTSRVAVETLITTGLVHVAGEVTTKAYADIPNLVRNKVLEIGYDSSKKGFDGASCGVSVSIGAQSPDIAQGVDTAYEKRVEGDEDELDKQGAGDQGLMFGYACDETPELMPLPIHVAHRLSRRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVVSSQHASDIDLDSLLAPDIREFVVEHVLAQ 225          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_RHOE4 (S-adenosylmethionine synthetase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=metK PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.553e-53
Identity = 120/233 (51.50%), Postives = 145/233 (62.23%), Query Frame = 2
Query:   68 LDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--------GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE 739
            + K  + LFTSESV EGHPDK+CD ISD++LDA L QDP ++VA ET   T  V V GE+TT A  D  KIVRDT   IG+ S   G D + C V V I  QSP+IAQGV      R + I        GAGDQG MFGYAT +TPE MPL   LA +L  RLTEVRK+    +LRPDGKTQVT+EY  D      VR+ TV+ISTQH   +  D  +  DL+E V+  V+ +
Sbjct:    1 MSKSGSRLFTSESVTEGHPDKICDAISDSILDALLTQDPRARVAVETLVTTGQVHVAGEVTTTAYADIPKIVRDTVLEIGYDSSAKGFDGNSCGVNVAIGAQSPEIAQGVDHSHEARVDGISDDEIDRQGAGDQGLMFGYATTDTPELMPLPIALAHRLSRRLTEVRKSGVLPYLRPDGKTQVTIEYDGDKA----VRLDTVVISTQHAADIDLDNLLTPDLREKVLHSVLTD 229          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_TREPS (S-adenosylmethionine synthetase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=metK PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.028e-53
Identity = 117/227 (51.54%), Postives = 144/227 (63.44%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR-PEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI-PEKYLD 751
            METF FTSESV+EGHPDKLCDQISDAVLDACL QDP S VACET   T+++++ GEI+T+A ++  +I RD    IG+VS DVGLDA    VL     QSPDIAQGVHG   K      GAGDQG MFG+A  ETPEFMP   + A  +      +R      WLRPD K+QVTV+Y        PVR+  V+ S QHD + + + I   L E +++P + P   LD
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHGAGLKEFAGSQGAGDQGIMFGFACRETPEFMPAPLMCAHAVVRYAATLRHERRVPWLRPDAKSQVTVQYEGHR----PVRISAVVFSQQHDPSPSYETIRETLIEEIVRPALAPTGLLD 222          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_TREPA (S-adenosylmethionine synthetase OS=Treponema pallidum GN=metK PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.028e-53
Identity = 117/227 (51.54%), Postives = 144/227 (63.44%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR-PEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI-PEKYLD 751
            METF FTSESV+EGHPDKLCDQISDAVLDACL QDP S VACET   T+++++ GEI+T+A ++  +I RD    IG+VS DVGLDA    VL     QSPDIAQGVHG   K      GAGDQG MFG+A  ETPEFMP   + A  +      +R      WLRPD K+QVTV+Y        PVR+  V+ S QHD + + + I   L E +++P + P   LD
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHGAGLKEFAGSQGAGDQGIMFGFACRETPEFMPAPLMCAHAVVRYAATLRHERRVPWLRPDAKSQVTVQYEGHR----PVRISAVVFSQQHDPSPSYETIRETLIEEIVRPALAPTGLLD 222          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_STRAW (S-adenosylmethionine synthetase OS=Streptomyces avermitilis GN=metK PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.028e-53
Identity = 118/225 (52.44%), Postives = 143/225 (63.56%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPED-------IGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKP 727
            M   LFTSESV EGHPDK+ DQISD +LDA L +DP S+VA ET   T +V V GE+TTKA     ++VRD    IG+ S   G D   C V V+I  QSPDIAQGV   +  R E         GAGDQG MFGYATDETP  MPL   LA +L  RL+EVRKN T  +LRPDGKTQVT+EY  D      VR+ TV++S+QH   +  D  +A D++E V++P
Sbjct:    1 MSRRLFTSESVTEGHPDKIADQISDTILDALLREDPTSRVAVETLITTGLVHVAGEVTTKAYAPIAQLVRDKILEIGYDSSKKGFDGASCGVSVSIGSQSPDIAQGVDTAYENRVEGDEDELDRQGAGDQGLMFGYATDETPTLMPLPIHLAHRLSHRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVVSSQHASDIDLDSLLAPDIREFVVEP 221          
The following BLAST results are available for this feature:
BLAST of CF832474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_NOCSJ9.105e-5453.39S-adenosylmethionine synthetase OS=Nocardioides sp... [more]
METK_LEIXX9.105e-5452.70S-adenosylmethionine synthetase OS=Leifsonia xyli ... [more]
METK_XANCP1.189e-5349.56S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_BORPD1.189e-5351.58S-adenosylmethionine synthetase OS=Bordetella petr... [more]
METK_THEEB1.553e-5349.36S-adenosylmethionine synthetase OS=Thermosynechoco... [more]
METK_STRGG1.553e-5351.53S-adenosylmethionine synthetase OS=Streptomyces gr... [more]
METK_RHOE41.553e-5351.50S-adenosylmethionine synthetase OS=Rhodococcus ery... [more]
METK_TREPS2.028e-5351.54S-adenosylmethionine synthetase OS=Treponema palli... [more]
METK_TREPA2.028e-5351.54S-adenosylmethionine synthetase OS=Treponema palli... [more]
METK_STRAW2.028e-5352.44S-adenosylmethionine synthetase OS=Streptomyces av... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832474 ID=CF832474; Name=CF832474; organism=Citrus sinensis; type=EST; length=751bp
CTTTGCTATTGCGGTCTGGTCTTAAGTCTGAATCTTAGATCTGCGCCGAA
ACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCTATTCACCTCT
GAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACCAGATCTCTGA
TGCGGTGCTTGATGCCTGCCTTGAGCAGGATCCTGAGAGCAAGGTTGCCT
GTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGAGAGATTACC
ACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGACACTTGCCGTTC
CATTGGATTTGTTTCTGATGATGTGGGTCTTGATGCCGATCACTGCAAAG
TCCTGGTCAATATTGAGCAACAAAGCCCTGATATTGCCCAGGGTGTTCAT
GGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGGTGACCAGGGCCA
TATGTTTGGTTATGCTACTGATGAGACCCCTGAATTTATGCCTTTGAGCC
ATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAGGTTAGGAAGAAT
AGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCAGGTCACTGTTGA
GTACTACAATGACAATGGTGCCATGGTCCCAGTCCGTGTCCACACGGTCC
TCATTTCAACCCAGCATGATGAGACTGTCACAAATGATGAAATTGCTGCT
GACCTTAAGGAGCACGTCATTAAGCCTGTCATCCCCGAGAAGTACCTTGA
T
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