CF832474

Overview
NameCF832474
Unique NameCF832474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_PROM5 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9515) GN=metK PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.028e-53
Identity = 116/231 (50.22%), Postives = 153/231 (66.23%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDV-GLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPV 730
            M  F+FTSESV EGHPDK+CDQISDAVLDA L++DPES+VACET   T + ++ GEIT++AK+DY K+VR   + IG+      G D++ C VLV +++QSPDI+QGV+       ED+    GAGDQG MFGYA DETPE MPL   LA +L  +L +VR  +   +L PDGKTQV+++Y       VPV ++T+LISTQH        +E     +I  DL  +V+ PV
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLKEDPESRVACETVVNTGLCLLTGEITSRAKLDYIKLVRKVIKEIGYEGAKAGGFDSNSCAVLVALDEQSPDISQGVN-EADDLNEDLENNTGAGDQGIMFGYACDETPELMPLPISLAHRLARQLAKVRHENVLEYLLPDGKTQVSIDYKKG----VPVSINTILISTQHRAEIDGIINEKEIRQKITDDLWINVVLPV 226          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_MYCSM (S-adenosylmethionine synthetase OS=Mycobacterium smegmatis GN=metK PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.649e-53
Identity = 120/225 (53.33%), Postives = 144/225 (64.00%), Query Frame = 2
Query:   89 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-GHFTK-----RPEDI-GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV-TNDEIAADLKEHVIKPVIPE 739
            LFTSESV EGHPDK+CD ISD+VLDA LEQDP+S+VA ET   T  V V GE+TT A  D  KIVRD    IG+ S   G D   C V V I  QSPDIAQGV   H T+      P D+ GAGDQG MFGYA  +TPE MPL   LA +L  RLTEVRKN    +LRPDGKTQVT++Y        PVR+ TV++STQH + +     +  D++E V+  V+ +
Sbjct:    6 LFTSESVTEGHPDKICDAISDSVLDALLEQDPKSRVAVETLVTTGQVHVAGEVTTTAYADIPKIVRDRILDIGYDSSTKGFDGASCGVNVAIGAQSPDIAQGVDTAHETRVEGKADPLDLQGAGDQGLMFGYAIGDTPELMPLPIALAHRLARRLTEVRKNGVLDYLRPDGKTQVTIQY----DGTTPVRLDTVVLSTQHADGIDLEGTLTPDIREKVVNTVLAD 226          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_MYCS2 (S-adenosylmethionine synthetase OS=Mycobacterium smegmatis GN=metK PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.649e-53
Identity = 120/225 (53.33%), Postives = 144/225 (64.00%), Query Frame = 2
Query:   89 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-GHFTK-----RPEDI-GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV-TNDEIAADLKEHVIKPVIPE 739
            LFTSESV EGHPDK+CD ISD+VLDA LEQDP+S+VA ET   T  V V GE+TT A  D  KIVRD    IG+ S   G D   C V V I  QSPDIAQGV   H T+      P D+ GAGDQG MFGYA  +TPE MPL   LA +L  RLTEVRKN    +LRPDGKTQVT++Y        PVR+ TV++STQH + +     +  D++E V+  V+ +
Sbjct:    6 LFTSESVTEGHPDKICDAISDSVLDALLEQDPKSRVAVETLVTTGQVHVAGEVTTTAYADIPKIVRDRILDIGYDSSTKGFDGASCGVNVAIGAQSPDIAQGVDTAHETRVEGKADPLDLQGAGDQGLMFGYAIGDTPELMPLPIALAHRLARRLTEVRKNGVLDYLRPDGKTQVTIQY----DGTTPVRLDTVVLSTQHADGIDLEGTLTPDIREKVVNTVLAD 226          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_JANMA (S-adenosylmethionine synthetase OS=Janthinobacterium sp. (strain Marseille) GN=metK PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.649e-53
Identity = 109/221 (49.32%), Postives = 149/221 (67.42%), Query Frame = 2
Query:   86 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 748
            +LFTSESV+EGHPDK+ DQISDA+LDA  +QDP+++VA ET   T +V++ GEITT A VDY ++ R T + IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DETPE MP +   A ++  R +E+RK+    WLRPD K+QVT+ Y +      PV + T+++STQH   + + +I   + E +IKPV+P ++L
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAIFQQDPKARVAAETLCNTGLVVLAGEITTFANVDYIEVARQTIKRIGYDNADYGIDYKSCAVLVAYDKQSPDIAQGV-DEGAGIDLDQGAGDQGLMFGYACDETPELMPAAIHYAHRIVERQSELRKDGRLPWLRPDAKSQVTLRYVDGR----PVSIDTIVLSTQHAPEMQHKDIEEAVIESIIKPVVPAEWL 220          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_HAEDU (S-adenosylmethionine synthetase OS=Haemophilus ducreyi GN=metK PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.460e-53
Identity = 114/229 (49.78%), Postives = 145/229 (63.32%), Query Frame = 2
Query:   65 QLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLD 751
            +L+ M   LFTSESV+EGHPDK+ DQISDAVLD  L+QDP+++VACET  KT M +V GEITT A VD E + R     IG+   D+G DA  C VL  I +QSPDI QGV     + P   GAGDQG MFGYAT+ET   MP     A +L  R  EVRK+   +WLRPD K+Q+T  Y N+      + +  V++STQH E V   E+   + E +IKP +P K+L+
Sbjct:    2 RLNSMAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVIYDIGYSHSDMGFDAHSCAVLNAIGKQSPDINQGVD---REDPLAQGAGDQGIMFGYATNETDVLMPAPITYAHRLMQRQAEVRKSGKLAWLRPDAKSQLTFAYENNQ----IIGIDAVVLSTQHAEEVKQKELIEGVMEEIIKPTLPSKWLN 223          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_CORDI (S-adenosylmethionine synthetase OS=Corynebacterium diphtheriae GN=metK PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.460e-53
Identity = 117/228 (51.32%), Postives = 147/228 (64.47%), Query Frame = 2
Query:   89 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV-------HGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLD 751
            LFTSESV EGHPDK+CD ISD +LDA L  DP ++VA ET T T +V V GE+ T   V+  K+VRD    IGF S +VG D   C V V+I +QS +I  GV        G  T   +  GAGDQG MFGYAT+ET   MPL   LA +L  RLT+VRK S  S LRPDGKTQVT+  Y+++G   PVR+ TV++STQHD  VT + + A +KEHV+  V+ +  L+
Sbjct:   11 LFTSESVTEGHPDKICDAISDTILDALLSVDPHARVAVETVTTTGLVHVVGEVRTSGYVEIPKLVRDKLIEIGFNSSEVGFDGRTCGVSVSIGEQSQEIGAGVDQSHEVRSGENTDADDQAGAGDQGLMFGYATNETATLMPLPIDLAHRLARRLTQVRKTSVVSHLRPDGKTQVTLA-YDESGR--PVRLDTVVVSTQHDPDVTQEWLFAQIKEHVVDWVLRDSGLE 235          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_POLSQ (S-adenosylmethionine synthetase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=metK PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.519e-53
Identity = 108/218 (49.54%), Postives = 149/218 (68.35%), Query Frame = 2
Query:   86 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE 739
            + FTSESV+EGHPDK+ DQISDA+LDA L QDP ++VA ET   T +V++ GEITT A VDY ++ R+T R IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MP+   L+ +L  R +++R++   +WLRPD K+QVT+ Y +      P  + TV++STQHDE ++ +++   + E +IKPV+P+
Sbjct:    5 YFFTSESVSEGHPDKVADQISDAILDAILAQDPTARVAAETLCNTGLVVLAGEITTHANVDYIQVARNTLREIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDKAHDD-GLDQGAGDQGLMFGYACDETSELMPMPIHLSHRLVERQSQLRRDGRLNWLRPDAKSQVTLRYVDGK----PDSIDTVVLSTQHDEEISLEKLREAVIEEIIKPVLPK 217          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_POLNS (S-adenosylmethionine synthetase OS=Polynucleobacter necessarius (strain STIR1) GN=metK PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.519e-53
Identity = 108/218 (49.54%), Postives = 149/218 (68.35%), Query Frame = 2
Query:   86 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE 739
            + FTSESV+EGHPDK+ DQISD++LDA L QDP ++VA ET   T +V++ GEITT A VDY ++ R+T R IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MPL   L+ +L  R +++R++   +WLRPD K+QVT+ Y +      P  + TV++STQHDE ++ +++   + E +IKPV+P+
Sbjct:    5 YFFTSESVSEGHPDKVADQISDSILDAILAQDPTARVAAETLCNTGLVVLAGEITTNANVDYIQVARNTLREIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDKAHDD-GLDQGAGDQGLMFGYACDETAELMPLPIHLSHRLVERQSQLRRDGRLNWLRPDAKSQVTLRYVDGK----PDSIDTVVLSTQHDEDISLEKLREAVIEEIIKPVLPK 217          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_HAEIN (S-adenosylmethionine synthetase OS=Haemophilus influenzae GN=metK PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.519e-53
Identity = 113/224 (50.45%), Postives = 148/224 (66.07%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 748
            M ++LFTSESV+EGHPDK+ DQISDAVLD  L+QDP+++VACET  KT M +V GEITT A VD E + R     IG+   ++G D   C VL  I +QS DI QGV     + P D GAGDQG MFGYAT+ET   MP +   A +L  + +EVRK+   +WLRPD K+QVT++ Y DN     V V  V++STQH E V+  ++   + E +IKPV+P ++L
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRKVICDIGYEHSEMGFDGHSCAVLNAIGKQSADINQGVD---RENPLDQGAGDQGIMFGYATNETDVLMPAAITYAHRLMEKQSEVRKSGKLAWLRPDAKSQVTLK-YEDNKI---VGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPSEWL 217          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_CORK4 (S-adenosylmethionine synthetase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=metK PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.519e-53
Identity = 113/224 (50.45%), Postives = 144/224 (64.29%), Query Frame = 2
Query:   89 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV-------HGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE 739
            LFTSESV EGHPDK+CD ISD++LDA L  DP+S VA ET   T  V V GE+  +  V+   +VR T R+IGF+S D+G D   C V V+I +QS +I  GV        G   +  +  GAGDQG MFGYAT+ETPE+MPL   LA +L  RLT VRK+     LRPDGKTQVT+ Y +DN    P+R+ T++ISTQHD  V+   +   L+ +VI PVI +
Sbjct:    5 LFTSESVTEGHPDKICDAISDSILDAMLAVDPDSHVAVETVVTTGQVHVVGEVRCRGYVEIPSLVRQTLRNIGFLSSDMGFDGATCGVSVSIGEQSLEIGAGVDTALEARDGAEVEDDDRAGAGDQGLMFGYATNETPEYMPLPIALAHRLARRLTAVRKDDIVPHLRPDGKTQVTLAYNDDNN---PIRIDTIVISTQHDPGVSRQWLEEQLRTNVITPVIKD 225          
The following BLAST results are available for this feature:
BLAST of CF832474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PROM52.028e-5350.22S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_MYCSM2.649e-5353.33S-adenosylmethionine synthetase OS=Mycobacterium s... [more]
METK_MYCS22.649e-5353.33S-adenosylmethionine synthetase OS=Mycobacterium s... [more]
METK_JANMA2.649e-5349.32S-adenosylmethionine synthetase OS=Janthinobacteri... [more]
METK_HAEDU3.460e-5349.78S-adenosylmethionine synthetase OS=Haemophilus duc... [more]
METK_CORDI3.460e-5351.32S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_POLSQ4.519e-5349.54S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_POLNS4.519e-5349.54S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_HAEIN4.519e-5350.45S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_CORK44.519e-5350.45S-adenosylmethionine synthetase OS=Corynebacterium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832474 ID=CF832474; Name=CF832474; organism=Citrus sinensis; type=EST; length=751bp
CTTTGCTATTGCGGTCTGGTCTTAAGTCTGAATCTTAGATCTGCGCCGAA
ACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCTATTCACCTCT
GAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACCAGATCTCTGA
TGCGGTGCTTGATGCCTGCCTTGAGCAGGATCCTGAGAGCAAGGTTGCCT
GTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGAGAGATTACC
ACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGACACTTGCCGTTC
CATTGGATTTGTTTCTGATGATGTGGGTCTTGATGCCGATCACTGCAAAG
TCCTGGTCAATATTGAGCAACAAAGCCCTGATATTGCCCAGGGTGTTCAT
GGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGGTGACCAGGGCCA
TATGTTTGGTTATGCTACTGATGAGACCCCTGAATTTATGCCTTTGAGCC
ATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAGGTTAGGAAGAAT
AGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCAGGTCACTGTTGA
GTACTACAATGACAATGGTGCCATGGTCCCAGTCCGTGTCCACACGGTCC
TCATTTCAACCCAGCATGATGAGACTGTCACAAATGATGAAATTGCTGCT
GACCTTAAGGAGCACGTCATTAAGCCTGTCATCCCCGAGAAGTACCTTGA
T
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