CF832474

Overview
NameCF832474
Unique NameCF832474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_XYLFT (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=metK PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 110/226 (48.67%), Postives = 148/226 (65.49%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRK--NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 748
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QDP ++VACET  KT + ++ GEITT A VD E + R     IG+ S DVG D   C VL  I +QSPDI QGV     K+ E+ GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  NS   WLRPD K Q+T+ Y +     V   +  V++STQHD  +   ++   ++E ++KPV+P K+L
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSLLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWL 219          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_XYLFM (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M12) GN=metK PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 110/226 (48.67%), Postives = 148/226 (65.49%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRK--NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 748
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QDP ++VACET  KT + ++ GEITT A VD E + R     IG+ S DVG D   C VL  I +QSPDI QGV     K+ E+ GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  NS   WLRPD K Q+T+ Y +     V   +  V++STQHD  +   ++   ++E ++KPV+P K+L
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSPLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWL 219          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_XYLFA (S-adenosylmethionine synthetase OS=Xylella fastidiosa GN=metK PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 110/226 (48.67%), Postives = 148/226 (65.49%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRK--NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 748
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QDP ++VACET  KT + ++ GEITT A VD E + R     IG+ S DVG D   C VL  I +QSPDI QGV     K+ E+ GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  NS   WLRPD K Q+T+ Y +     V   +  V++STQHD  +   ++   ++E ++KPV+P K+L
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSPLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWL 219          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_XYLF2 (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M23) GN=metK PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 110/226 (48.67%), Postives = 148/226 (65.49%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRK--NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 748
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QDP ++VACET  KT + ++ GEITT A VD E + R     IG+ S DVG D   C VL  I +QSPDI QGV     K+ E+ GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  NS   WLRPD K Q+T+ Y +     V   +  V++STQHD  +   ++   ++E ++KPV+P K+L
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSLLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWL 219          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_NOSP7 (S-adenosylmethionine synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=metK PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 114/230 (49.57%), Postives = 145/230 (63.04%), Query Frame = 2
Query:   86 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPED-------IGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPV 730
            +LFTSESV EGHPDK+CDQISD +LDA L QDP S+VA E    T +V++ GEITTKA V++  + R     IG+ + D G  A+   VL+ +++QSPDIAQGV+     R +D       IGAGDQG MFG+A++ETPE MPL   LA ++  RL  VRK    S+LRPDGKTQVTV Y +      PV + T+LISTQH        DE     +I  DL   V++PV
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTILDALLTQDPSSRVAAEVVVNTGLVLITGEITTKANVNFVNLARKKIAEIGYTNADNGFSANSTSVLLALDEQSPDIAQGVNTAQETRQQDSDELFDKIGAGDQGIMFGFASNETPELMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVTVVYEDGR----PVGIDTILISTQHTATIGEITDEAAVQAKIKQDLWSAVVEPV 230          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_MESFL (S-adenosylmethionine synthetase OS=Mesoplasma florum GN=metK PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 104/217 (47.93%), Postives = 147/217 (67.74%), Query Frame = 2
Query:   89 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE 739
            LFTSESV+EGHPDK+CDQISDA+LD  L+QDP +KVACET   TN +++ G+ITT A VDYEKI RD  R IG+ +D  G++AD CK+ + +EQQS DIA G+        E IGAGDQG MFGYAT+E+  F+PL+  ++ +L    +++RK     W RPD K+QVT++Y +++      ++ T+L+S QHD+ +  +E    +K  ++  V  E
Sbjct:    4 LFTSESVSEGHPDKICDQISDAILDEVLKQDPNAKVACETFATTNYLLIGGQITTTASVDYEKIARDVLRKIGYNNDAYGINADTCKIDIRVEQQSADIALGI----DLDTEVIGAGDQGIMFGYATNESKTFLPLAITISHELVYLASKLRKEGKFKWARPDMKSQVTIDYTDESNP----KIDTILMSIQHDDEMIEEEFKKFIKSEIMDVVAKE 212          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_STRFR (S-adenosylmethionine synthetase OS=Streptomyces fradiae GN=metK PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.315e-52
Identity = 118/232 (50.86%), Postives = 147/232 (63.36%), Query Frame = 2
Query:   77 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR--------PED----IGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVI 733
            M   LFTSESV EGHPDK+ D+ISD VLDA L +DP ++VA ET   T  V + GE+TT A     ++VRDT  SIG+ S   G D   C V V+I  QSPDIA+GV   + +R        P D     GAGDQG MFGYA DETPE MPL   LA +L  RL+EVRKN T  +LRPDGKTQVT+EY  D      VR+ TV++S+QH   +  D  +A D++ HV++PV+
Sbjct:    1 MSRRLFTSESVTEGHPDKIADRISDTVLDALLARDPRARVAVETLITTGQVHIAGEVTTTAYAPIAQLVRDTVLSIGYDSSAKGFDGASCGVSVSIGAQSPDIARGVDTAYERRGGGTAPGGPGDELDRQGAGDQGLMFGYACDETPELMPLPINLAHRLSRRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVVSSQHASGIDLDSLLAPDIRRHVVEPVL 228          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_RHOSR (S-adenosylmethionine synthetase OS=Rhodococcus sp. (strain RHA1) GN=metK PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.315e-52
Identity = 119/226 (52.65%), Postives = 142/226 (62.83%), Query Frame = 2
Query:   89 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV-HGHFTKRPE-------DIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE 739
            LFTSESV EGHPDK+CD ISD++LDA L  DP ++VA ET   T  V V GE+TT A  D  KIVRDT   IG+ S   G D + C V V I  QSP+IAQGV H H  +  E         GAGDQG MFG+AT +TPE MPL   LA +L  RLTEVRK+    +LRPDGKTQVT+EY  D      VR+ TV+ISTQH   +  D  +  DL+E V+  V+ E
Sbjct:    8 LFTSESVTEGHPDKICDAISDSILDALLTDDPRARVAVETLVTTGQVHVAGEVTTSAYADIPKIVRDTVLEIGYDSSAKGFDGNSCGVNVAIGAQSPEIAQGVDHSHEVRTGELSDDEIDRQGAGDQGLMFGFATTDTPELMPLPIALAHRLSRRLTEVRKSGVLPYLRPDGKTQVTIEYDGDKA----VRLDTVVISTQHAADIDLDNLLTPDLREKVLGSVLAE 229          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_MICAN (S-adenosylmethionine synthetase OS=Microcystis aeruginosa (strain NIES-843) GN=metK PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.315e-52
Identity = 111/233 (47.64%), Postives = 149/233 (63.95%), Query Frame = 2
Query:   86 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV--------TNDEIAADLKEHVIKPVIPE 739
            +LFTSESV EGHPDK+CDQISD +LDA L QD  S+VA E    T +V++ GEIT+KA+V +  +VR     IG+++ D G  ++ C VLV +++QSPDI+QGV      R        + IGAGDQG +FG+A +ETPEFMPL   LA ++  RL  VRK    S+LRPDGKTQV+V Y +      PV + T+L+STQHD T+           +I +DL E V++PV  +
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTILDALLSQDDHSRVAAEVVVNTGLVLITGEITSKAQVHFVDLVRKKIAEIGYINADNGFSSNSCTVLVALDEQSPDISQGVTAAQENRELLSNDELDKIGAGDQGIVFGFACNETPEFMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVSVIYEDGR----PVGIDTILVSTQHDATIGDITDNDLVQQKIKSDLWEAVVQPVFSD 233          
BLAST of CF832474 vs. ExPASy Swiss-Prot
Match: METK_CHRSD (S-adenosylmethionine synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metK PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.315e-52
Identity = 112/223 (50.22%), Postives = 144/223 (64.57%), Query Frame = 2
Query:   80 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL 748
            E  LFTSESV+EGHPDK+ DQISDAVLDA + +D +++VACET  KT + +V GEITT A VD E +VR     IG+ S DVG D + C VL  I +QS DIAQGV      +PED GAGDQG MFGYAT+ET  +MP     + +L  R  E+RK+    WLRPD K+Q+T  Y   +    P  V  V++STQHD  +  DE+   +K  +I+ VIP ++L
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIARDKQARVACETMVKTGVAIVAGEITTSAWVDLEDLVRRVINDIGYTSSDVGFDGNTCGVLNLIGKQSVDIAQGVD---RSKPEDQGAGDQGLMFGYATNETDSYMPAPIHYSHRLVERQAELRKHGLLPWLRPDAKSQLTFRY---DAQGKPCAVDAVVLSTQHDPDIDQDELREMVKREIIEEVIPAEWL 219          
The following BLAST results are available for this feature:
BLAST of CF832474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_XYLFT1.007e-5248.67S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLFM1.007e-5248.67S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLFA1.007e-5248.67S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLF21.007e-5248.67S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_NOSP71.007e-5249.57S-adenosylmethionine synthetase OS=Nostoc punctifo... [more]
METK_MESFL1.007e-5247.93S-adenosylmethionine synthetase OS=Mesoplasma flor... [more]
METK_STRFR1.315e-5250.86S-adenosylmethionine synthetase OS=Streptomyces fr... [more]
METK_RHOSR1.315e-5252.65S-adenosylmethionine synthetase OS=Rhodococcus sp.... [more]
METK_MICAN1.315e-5247.64S-adenosylmethionine synthetase OS=Microcystis aer... [more]
METK_CHRSD1.315e-5250.22S-adenosylmethionine synthetase OS=Chromohalobacte... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832474 ID=CF832474; Name=CF832474; organism=Citrus sinensis; type=EST; length=751bp
CTTTGCTATTGCGGTCTGGTCTTAAGTCTGAATCTTAGATCTGCGCCGAA
ACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCTATTCACCTCT
GAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACCAGATCTCTGA
TGCGGTGCTTGATGCCTGCCTTGAGCAGGATCCTGAGAGCAAGGTTGCCT
GTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGAGAGATTACC
ACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGACACTTGCCGTTC
CATTGGATTTGTTTCTGATGATGTGGGTCTTGATGCCGATCACTGCAAAG
TCCTGGTCAATATTGAGCAACAAAGCCCTGATATTGCCCAGGGTGTTCAT
GGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGGTGACCAGGGCCA
TATGTTTGGTTATGCTACTGATGAGACCCCTGAATTTATGCCTTTGAGCC
ATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAGGTTAGGAAGAAT
AGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCAGGTCACTGTTGA
GTACTACAATGACAATGGTGCCATGGTCCCAGTCCGTGTCCACACGGTCC
TCATTTCAACCCAGCATGATGAGACTGTCACAAATGATGAAATTGCTGCT
GACCTTAAGGAGCACGTCATTAAGCCTGTCATCCCCGAGAAGTACCTTGA
T
back to top