CF832478

Overview
NameCF832478
Unique NameCF832478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10752 contig Csv1_Contig10752:199..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_BACSU (Acetoin utilization protein acuC OS=Bacillus subtilis GN=acuC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 69/263 (26.24%), Postives = 111/263 (42.21%), Query Frame = 2
Query:   23 IYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKS--------LQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQK-----------VEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            IYSP Y       E  HPF+  +       L +    D   IV P  AS+E+L +VH++ Y+++        L +    S  +      +F        +L      VGGT+ AA   ++ +   A N+GGG HH       GFC Y D ++ I Y   + + +RV+ ID DAH G+G +  F  +  V  L +   G Y   +     I +K           + + + T  + +L+    A       F+P+++I   G D
Sbjct:    7 IYSPSYQTYMFHQE--HPFNQQRVLLTYDLLKTINAFDDGDIVTPRLASEEELSLVHTDDYIQAVKLAGAGKLPAEEGESYGLGTEDTPVFAGMHEAASLL------VGGTLTAADWVMSGQALHAANLGGGLHHGFRGRASGFCIYNDSAVAIQYIQKKYS-ARVLYIDTDAHHGDGVQFTFYDNPDVCTLSIHETGRYL--FPGTGQIQEKGSGKGYGYSFNIPLDAFTEDDSFLEAYRTAASEVAAYFEPDVIISQNGAD 258          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_BOVIN (Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.798e-13
Identity = 67/261 (25.67%), Postives = 108/261 (41.38%), Query Frame = 2
Query:    8 LPLPLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            LP   IYSP+Y      + K+      +   +   + +     +  IV+P  AS E++   H+++YL+ LQ  S        +     L  +C     + + +   VGG  + A      G    AIN  GG+HH   DE  GFC   D  L I    ++    R++ +DLD H G+G E  FS  S+V  + +  F+PG +P   +         R+    V +        Y    +  L+     F+P+ V+   G D
Sbjct:   14 LPPVYIYSPEYVSVCDSLAKV----PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMASFHTDAYLQHLQKVSEDGDDDHPDSIEYGLGYDCPATEGI-FDYAAAVGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDCIQDERYYHICESVLKEVYIAFNPKAVVLQLGAD 267          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: ACUC_STAXY (Acetoin utilization protein acuC OS=Staphylococcus xylosus GN=acuC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.798e-13
Identity = 56/243 (23.05%), Postives = 109/243 (44.86%), Query Frame = 2
Query:   71 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ-SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAIN---VGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEARRFIDQKVEVVSGTTTN----------EYLKKLDEALEVAGHTFDPELVIYNAGTDI 751
            HPF+  +     + L   G L ++ I+ P  A+ ++L ++H+  Y+++++ +S  +    E     L     +Q ++++    ++ G  L        G   N   +GGG HH       GFC Y D+++ I Y   + N  RV+ ID DAH G+G +  F ++ +  I  +   G  ++P    +  + ++  E   G T N           +L    + +E    +F P++++   G D+
Sbjct:   25 HPFNQMRLKLTTELLMELGQLKQHHIISPRIATDDELSLIHAYDYIQAIRHASHGILSENEAKKYGLDGEDTLQFRMMHKHSARIVGGALNLADQIMSGTLTNGCHLGGGLHHSLPGRANGFCIYNDVAITISYLMQKYN-QRVLCIDTDAHHGDGTQWSFYTNDQALIYSIHETGKFLFP---GSGHYTERGAEKGFGYTVNIPLEPYTEDQSFLDVFKQTIEPVVASFKPDIIVSVHGVDV 263          
The following BLAST results are available for this feature:
BLAST of CF832478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ACUC_BACSU2.680e-1326.24Acetoin utilization protein acuC OS=Bacillus subti... [more]
HDAC8_BOVIN7.798e-1325.67Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 ... [more]
ACUC_STAXY7.798e-1323.05Acetoin utilization protein acuC OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832478 ID=CF832478; Name=CF832478; organism=Citrus sinensis; type=EST; length=753bp
TTCCTATCTTCCGCTCCCTCTGATATACTCGCCTGACTACAATATTTCGT
TTCTTGGCATAGAGAAGCTGCACCCATTTGATTCTTCCAAATGGGGTCGC
ATTTGCCAGTTCCTTAGCTCTGAGGGTTTTCTGGATAAAAATTGTATCGT
TGAGCCACTAGAAGCTTCCAAGGAAGATCTGCTTGTGGTTCATTCAGAAT
CATATTTGAAGAGTCTACAGAGCAGTCCAAATGTTTCCATTATAATTGAG
GTGCCTCCTGTTGCACTATTTCCCAATTGTCTTGTGCAGAGGAAAGTTCT
TTATCCATTTCGCAAGCAGGTGGGTGGAACCATATTGGCAGCTAAGCTTG
CAAAAGAGCGAGGGTGGGCCATTAATGTTGGAGGAGGATTCCATCACTGC
TCTGCTGATGAAGGAGGTGGATTTTGTGCTTATGCAGATATTTCTCTTTG
CATACATTATGCCTTTGTTCAACTAAATATATCAAGGGTCATGATAATTG
ATCTTGATGCACATCAAGGAAATGGTCACGAGAAGGACTTTTCCAGTGAC
AGTCGTGTTTATATTCTGGATATGTTTAACCCTGGAATTTATCCTCGGGA
CTATGAGGCAAGACGTTTTATTGATCAGAAGGTCGAAGTAGTGAGTGGGA
CAACAACAAATGAGTACTTAAAGAAATTAGATGAAGCACTTGAGGTTGCT
GGTCATACGTTTGATCCTGAGCTGGTGATTTACAATGCCGGCACTGATAT
CCT
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