CF832491

Overview
NameCF832491
Unique NameCF832491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832491_ssr319 microsatellite CF832491_ssr319:319..336. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1105..1928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_BURP8 (Adenosylhomocysteinase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.936e-43
Identity = 95/160 (59.38%), Postives = 109/160 (68.12%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GN  +I   HMK M++NAIVCNIGHFD+EIDV     Y       IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+ E S  KYE KVYVLPK LDEKV           LT LT EQA YI V  +GP+KP HYRY
Sbjct:  320 GNYHVIGHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYTWEN---IKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFVEGS--KYENKVYVLPKQLDEKVARLHLARIGANLTELTSEQAGYIGVDKNGPFKPNHYRY 473          
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPT (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain TIE-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.446e-43
Identity = 94/160 (58.75%), Postives = 112/160 (70.00%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GNKDII + HM+ MK+ AIVCNIGHFDNEI V  L+    +K   IKPQ D   FP+    +I+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL++ +  GKYEKKVYVLPK LDEKV           LT L K+QADYI V  +GP+K  HYRY
Sbjct:  316 GNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVATLKN---MKWDNIKPQVDEITFPD-GKRMILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELFQNQ--GKYEKKVYVLPKSLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 469          
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_RHOP2 (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain HaA2) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.446e-43
Identity = 91/160 (56.88%), Postives = 110/160 (68.75%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GNKDII + HM+ MK+ AIVCNIGHFDNEI +  L+    +K   IKPQ D   FP+    +I+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL+     GKY+K+VYVLPK LDEKV           LT L K+QADYI V  +GP+K  HYRY
Sbjct:  316 GNKDIITIEHMRAMKDRAIVCNIGHFDNEIQIAHLKN---LKWDNIKPQVDEITFPD-GKRMILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELFANNKDGKYKKEVYVLPKSLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 471          
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_FLAPJ (Adenosylhomocysteinase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.446e-43
Identity = 88/160 (55.00%), Postives = 108/160 (67.50%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GNKDI++  H ++MK+  IVCNIGHFDNEID+  L    G  +I IKPQ D++        I++LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELW  K++  Y   VY+LPKHLDEKV           L  L  +QA YI V  DGP+KP +YRY
Sbjct:  283 GNKDIVLGSHFEQMKDKTIVCNIGHFDNEIDMAWLNKNHGASKIEIKPQVDKYTI--AGKDILILAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELW--KNSAAYNNDVYMLPKHLDEKVAFLHLAKLGVELEVLRDDQAAYIGVGVDGPFKPEYYRY 438          
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_SYNPW (Adenosylhomocysteinase OS=Synechococcus sp. (strain WH7803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.419e-43
Identity = 94/160 (58.75%), Postives = 112/160 (70.00%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GN  +I   H+ KMK+ AIVCNIGHFDNEIDV  L+ Y       IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ + +  +Y K+VYVLPKHLDE V           LT L+K+QADYI+V  +GP+KP HYRY
Sbjct:  323 GNYQVIRNEHLLKMKDEAIVCNIGHFDNEIDVASLKDYEWEN---IKPQVDHITLPSGNR-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFTKGN--EYGKEVYVLPKHLDEMVARLHLDRIGAKLTELSKDQADYINVPVEGPFKPDHYRY 476          
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPA (Adenosylhomocysteinase OS=Rhodopseudomonas palustris GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.419e-43
Identity = 94/160 (58.75%), Postives = 112/160 (70.00%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GNKDII + HM+ MK+ AIVCNIGHFDNEI V  L+    +K   IKPQ D   FP+    +I+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL++ +  GKYEKKVYVLPK LDEKV           LT L K+QADYI V  +GP+K  HYRY
Sbjct:  316 GNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVATLKN---MKWDNIKPQVDEITFPD-GKRMILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELFQNQ--GKYEKKVYVLPKTLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 469          
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_NITEC (Adenosylhomocysteinase OS=Nitrosomonas eutropha (strain C91) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.419e-43
Identity = 95/161 (59.01%), Postives = 111/161 (68.94%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGK-YEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GN  +I   HM KMKN AIVCNIGHFD+EID+  ++ Y       IKPQ D  +FP T   IIVLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+    GK Y+KKVYVLPK LDE V           LT LT EQA Y+++  +GPYKP  YRY
Sbjct:  325 GNLRVITHDHMLKMKNQAIVCNIGHFDSEIDIASVQKYQWEN---IKPQVDHVIFP-TGRRIIVLAQGRLVNLGCATGHPSFVMSSSFTNQVLAQMELWQ---NGKDYQKKVYVLPKQLDEMVARLHLGKLGVKLTELTDEQAHYLNLDKNGPYKPEMYRY 478          
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_MYXXD (Adenosylhomocysteinase OS=Myxococcus xanthus (strain DK 1622) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.419e-43
Identity = 96/161 (59.63%), Postives = 110/161 (68.32%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYE-KKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GNK +I   HM KMK+ AIVCNIGHFDNEI+V  LE Y   K   IKPQ D  +FP+ N  II+LA+GRL+NLGC TGHPS+VMS SF NQ IAQ+EL+    +  YE  KVYVLPKHLDEKV           LT L++EQADYI V   GPYKP  YRY
Sbjct:  322 GNKGVITHDHMAKMKDQAIVCNIGHFDNEIEVASLEKY---KWEEIKPQVDHIIFPD-NKRIILLAKGRLVNLGCGTGHPSYVMSSSFANQTIAQIELYSH--SANYEVGKVYVLPKHLDEKVARLQLKKLNAQLTELSQEQADYIGVKTSGPYKPDTYRY 476          
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_METS4 (Adenosylhomocysteinase OS=Methylobacterium sp. (strain 4-46) GN=ahcY PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.419e-43
Identity = 93/160 (58.13%), Postives = 110/160 (68.75%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GNKD+I + HM+ MK+ AIVCNIGHFDNEI V GL+    +K   IKPQ D   FP+ +  II+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+ELW  +  GKYE +VY LPK LDEKV           LT L  +QA YI V A GP+KP HYRY
Sbjct:  315 GNKDVITIDHMRSMKDRAIVCNIGHFDNEIQVAGLKN---LKWSNIKPQVDEIEFPDGHR-IILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELWTNQ--GKYENQVYTLPKTLDEKVAALHLEKIGVKLTTLRPDQAAYIGVQASGPFKPDHYRY 468          
BLAST of CF832491 vs. ExPASy Swiss-Prot
Match: SAHH_METPB (Adenosylhomocysteinase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=ahcY PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.436e-42
Identity = 93/160 (58.13%), Postives = 113/160 (70.62%), Query Frame = -1
Query:  345 GNKDIIMVXHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 824
            GNKDII + HM+ MK+ AIVCNIGHFDNEI V GL+    +K   IKPQ D   F + +  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW   + GKYE++VY LPK LDEKV           L++L  +QA YI VS +GP+KP HYRY
Sbjct:  315 GNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVAGLKN---LKWQNIKPQVDEIEFADGHR-IILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELW--TNPGKYERQVYTLPKTLDEKVAALHLEKIGVKLSKLRPDQAAYIGVSQNGPFKPEHYRY 468          
The following BLAST results are available for this feature:
BLAST of CF832491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
SAHH_BURP84.936e-4359.38Adenosylhomocysteinase OS=Burkholderia phymatum (s... [more]
SAHH_RHOPT6.446e-4358.75Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_RHOP26.446e-4356.88Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_FLAPJ6.446e-4355.00Adenosylhomocysteinase OS=Flavobacterium psychroph... [more]
SAHH_SYNPW8.419e-4358.75Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_RHOPA8.419e-4358.75Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_NITEC8.419e-4359.01Adenosylhomocysteinase OS=Nitrosomonas eutropha (s... [more]
SAHH_MYXXD8.419e-4359.63Adenosylhomocysteinase OS=Myxococcus xanthus (stra... [more]
SAHH_METS48.419e-4358.13Adenosylhomocysteinase OS=Methylobacterium sp. (st... [more]
SAHH_METPB1.436e-4258.13Adenosylhomocysteinase OS=Methylobacterium populi ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01P03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832491 ID=CF832491; Name=CF832491; organism=Citrus sinensis; type=EST; length=824bp
GGGGTGCGGGCCCCACGAGTTTTTTTTTTTTTTTTATAATCATTCATCAG
TAAACAATAAGGATAACCTTATGCAGCAAAGCAAGCAAAACTTAAAACTG
CATCAAATACAACATAATCCAACACGGCCCCATCCAAAACCTTATTCAAA
TCCCAAATGGTCTTCAATCAACTGAAACAAATCCGTTTCTTTCCTCCAAC
TTTCCCACCACCCAAACACACACTACTACCAAATTTAAACCTAACATCCT
ACTACAGATCATCATTGAAAACAATCAAGCCGGCCAAATATTTTGTTTCT
TTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCTTCCACTTAGTACCT
GTAGTGAAGAGGCTTGTAAGGACCATCGGCGGACACACTGATGTAGTCAG
CCTGCTCCTTGGTGAGCCTGGTGAGCTTAGCTCCAAGTTTGCCAAGGTGA
AGAGCAGCAACCTTCTCATCGAGGTGCTTGGGCAGAACATACACCTTCTT
CTCGTACTTGCCGGTGCTCTTCTCCTTCCAGAGCTCAAGCTGGGCAATCA
CCTGATTGGTGAAGGAACAGGACATCACAAAGCTGGGGTGCCCAGTGGCA
CATCCCAAGTTCATGAGACGTCCCTCAGCCAACACGATGATGCCTGAGTT
GGTCTCGGGGAAGACCCACCTATCAGTTTGGGGCTTGATGGTAATGCGCT
TAACACCCGGGTAGGTCTCAAGACCGAGCACATCAATTTCATTATCAAAG
TGACCAATGTTGCAAACAATTGCATTGTTCTTCATCTTCTTCATGTGGNC
AACCATGATGATGTCCTTGTTACC
back to top