CF832493

Overview
NameCF832493
Unique NameCF832493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:61..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 50/129 (38.76%), Postives = 78/129 (60.47%), Query Frame = -2
Query:  254 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 640
            NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD     G L   E+  L   +    +  +P W LNRQKD   G+   ++   + +  R+D+  LKK+R +RGLRH  GL+VRGQ
Sbjct:   17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144          
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 48/128 (37.50%), Postives = 82/128 (64.06%), Query Frame = -2
Query:  254 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 637
            + F++I+R+   +VDG  K+ +AL  +KGIG   A  +  K  +D ++R GELS  ++  +   + + +  ++P+W  NR+KDY+ G    +V++ L   +R+D+ER KKI++ RG+RH  GL+VRGQ
Sbjct:    5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQ 132          
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 51/129 (39.53%), Postives = 78/129 (60.47%), Query Frame = -2
Query:  254 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 640
            NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD     G L   E+  L   + N     +P W LNRQKD   G+   ++   + +  R+D+  LKK+R +RGLRH  GL+VRGQ
Sbjct:   17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144          
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 48/131 (36.64%), Postives = 81/131 (61.83%), Query Frame = -2
Query:  254 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 646
            +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++     +D N   G LS  ++  L   +    + ++P W LNRQ D   G+   ++   + + L++DL  LKK R +RGLRH  GL+VRGQ
Sbjct:    1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTIDKFEE-QLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRHERGLKVRGQ 130          
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  200 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 649
            +     F++I+R+   ++DG  K+ + L SIKGIG   A  V +   +D  K+ G L+  E+  L  V+ +  Q  +P W  NR+KDY+ GK   ++ + L    R D+ER  KI + RG+RH +GL+VRGQ             V KKR
Sbjct:    1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 150          
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.218e-19
Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  254 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 640
            +++  + +RV NT++DG + ++ +LT IKG+GR  A  + + A V+ N   G+L  A +D +  VV+N    +IP W  NR KD   G    ++   + M + DD+  LKKIR +RG+RH  G +VRGQ
Sbjct:    5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETGQKVRGQ 132          
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = -2
Query:  254 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 631
            F+HI+R+ +T++DG + +MFALT IKGIG R A  +  +  VD   + GEL    ++ +   V    +  +P W LNR+KD   G+   ++S  +D     D+ERL K++ +RG+RH  G +VRGQ
Sbjct:    3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQ 127          
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 48/128 (37.50%), Postives = 75/128 (58.59%), Query Frame = -2
Query:  254 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 637
            ED ++ +R+  T++DG + +  ALT + GIG R A I+ +KADVD     G+L    ++ ++  V N     +P+W  N QKDY  G+ +    N L +  R D+ R+K I ++RG+RH  G +VRGQ
Sbjct:   18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQ 144          
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 46/127 (36.22%), Postives = 79/127 (62.20%), Query Frame = -2
Query:  254 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 634
            +F++I+RV   ++ G + +++AL  IKGIG   A  V KK  +D  +  G LS  E++ L   +    +  +P W LNR+KD   G    ++++ L + +R+D+E +KKI++++G+RH  GL+VRGQ
Sbjct:    4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRHMLGLKVRGQ 130          
BLAST of CF832493 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 44/129 (34.11%), Postives = 82/129 (63.57%), Query Frame = -2
Query:  254 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 640
            +++ + I+R+ +T++DG +++ ++LT I+GIG   A  +C+K  +D +   G LS  +++ L   V N  +   P WFLNR+KD + GK   ++   L +  + D++ +KK+++ +G+RH  GL+VRGQ
Sbjct:    2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129          
The following BLAST results are available for this feature:
BLAST of CF832493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_METMA2.369e-2138.7630S ribosomal protein S13P OS=Methanosarcina mazei... [more]
RS13_SULTO3.094e-2137.5030S ribosomal protein S13P OS=Sulfolobus tokodaii ... [more]
RS13_METBF3.094e-2139.5330S ribosomal protein S13P OS=Methanosarcina barke... [more]
RS13_METBU7.622e-2036.6430S ribosomal protein S13P OS=Methanococcoides bur... [more]
RS13_AERPE1.300e-1935.3330S ribosomal protein S13P OS=Aeropyrum pernix GN=... [more]
RS13_METHJ2.218e-1937.9830S ribosomal protein S13P OS=Methanospirillum hun... [more]
RS13_ARCFU6.452e-1938.8930S ribosomal protein S13P OS=Archaeoglobus fulgid... [more]
RS13_HALMA1.101e-1837.5030S ribosomal protein S13P OS=Haloarcula marismort... [more]
RS13_THEPD2.452e-1836.2230S ribosomal protein S13P OS=Thermofilum pendens ... [more]
RS13_PYRIL9.317e-1834.1130S ribosomal protein S13P OS=Pyrobaculum islandic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01P05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832493 ID=CF832493; Name=CF832493; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTTTGATAAAAATATTACCATAGAGAAAATAATACCT
TAAAGACAGACAGTTCAAATGCTTAAAACCCATCCAAAGAAAAGAAAATA
AATCTAATATTGTCTGATGCAAATGTTCAGCAATAGCAAGTCCAAACTCT
TCCTGAACATGTGTATAGATTGTTCAAAACATTGATAAAGGACAGCTCAA
CGCTTCTTGGAGACACCAACAGTCTTTCCACGACGGCCGGTGGTCTTGGT
GTGTTGTCCACGGACACGAAGACCCCAGTAGTGCCTGAGACCACGGTGGT
TCCTGATCTTCTTCAGACGCTCCAAGTCATCTCTCAACTTCATGTCCAGT
GCATTGGATACAACCTGAGAATACTTTCCATCCTTGTAATCCTTCTGTCT
GTTCAAGAACCAATCAGGGATTTTAAACTGTCGGGGATTTGCAACAACGA
CCATGAGATTGTCAAGTTCAGCAGCAGATAGTTCACCGGCCCTCTTGTTC
ATGTCAACATCAGCTTTCTTGCAAACGATGTTAGCCAGTCGCCTTCCAAT
ACCCTTAATTGAAGTAAGAGCAAACATAATCTTCTGCTTCCCGTCGACGT
TAGTGTTCAGCACACGCAAAATGTGCTGAAAATCTTCGTTCGCCACCAGA
GACATTTTCGATTGTGAGGATTGATGATGAAGAGAAGAGAGGCTCTTCGG
C
back to top