CF832494

Overview
NameCF832494
Unique NameCF832494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.622e-54
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = 3
Query:   48 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 503
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.622e-54
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = 3
Query:   48 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 503
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.730e-54
Identity = 97/134 (72.39%), Postives = 117/134 (87.31%), Query Frame = 3
Query:   51 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 452
            SLV  +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S+ LD  +RDDLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:    3 SLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWGLRVRGQH 136          
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.054e-53
Identity = 96/152 (63.16%), Postives = 123/152 (80.92%), Query Frame = 3
Query:   48 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 503
            MSLV  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E++ ++ +++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH             SKK+
Sbjct:    1 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.288e-51
Identity = 95/152 (62.50%), Postives = 119/152 (78.29%), Query Frame = 3
Query:   48 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 503
            MSLV  E FQHILR++NTN+DGK+K+  A+T+IKG+GRR +NIV KKADVD+ KRAGE +  E+D ++ +++NP Q+K+P+WFLNRQKD  DGKY Q+ S+ LD KLRDDLERLKKIR+HRGLRHYWGLRVRGQH             SKK+
Sbjct:    1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 3
Query:   48 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 503
            MSLV  ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+  EL+ ++ ++ NP QFKIP WFLNRQKD  DGK  Q+++N +D KLR+DLERLKKI+ HRGLRH   LRVRGQH             SKK+
Sbjct:    1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQHTKTTGRRGKTVGVSKKK 152          
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.640e-48
Identity = 86/133 (64.66%), Postives = 111/133 (83.46%), Query Frame = 3
Query:   51 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 449
            SLV   +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS  E++ L  ++ +PRQ+ IP WFLNRQKD KDGKYS  ++N +D+K R+DLERLKKIR HRG+RH++GLRVRGQ
Sbjct:    4 SLVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRHHFGLRVRGQ 136          
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 187.963 bits (476), Expect = 4.288e-47
Identity = 89/137 (64.96%), Postives = 111/137 (81.02%), Query Frame = 3
Query:   48 MSLVANED--FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 452
            MSLV  E   FQHILR+LNTNVDG  KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL+  EL+ ++ ++ NP  +KIP WFLNRQ D  DGK    ++N ++ KLRDDLERLKKIR HRG+RH+WGLRVRGQH
Sbjct:    1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137          
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.427e-42
Identity = 76/134 (56.72%), Postives = 109/134 (81.34%), Query Frame = 3
Query:   51 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 452
            ++ +  +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG ++ AE++ ++ ++     +KIP WFLNRQKD KDGK SQ+++NA++ +LR+D+E LKK+R HRGLRHYWGLRVRGQ+
Sbjct:    3 TVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQN 136          
BLAST of CF832494 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 55/131 (41.98%), Postives = 87/131 (66.41%), Query Frame = 3
Query:   57 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 449
            +A ++F+H++R+   +VDG   I  ALT I+GIG+  A  +CK  D+D + + G +    +  +  V+ NP++F IP+WFLNR+ DY+ G+   ++ + L+M LRDDL R+K IR+++G RH  GL VRGQ
Sbjct:    1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGKRHEVGLPVRGQ 131          
The following BLAST results are available for this feature:
BLAST of CF832494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_CANFA3.622e-5465.1340S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN3.622e-5465.1340S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_CHLRE4.730e-5472.3940S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_SPOFR1.054e-5363.1640S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_DROME1.288e-5162.5040S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_SCHPO1.090e-5063.1640S ribosomal protein S18 OS=Schizosaccharomyces p... [more]
RS18_DICDI8.640e-4864.6640S ribosomal protein S18 OS=Dictyostelium discoid... [more]
RS18_YEAST4.288e-4764.9640S ribosomal protein S18 OS=Saccharomyces cerevis... [more]
RS18_ENTHI1.427e-4256.7240S ribosomal protein S18 OS=Entamoeba histolytica... [more]
RS13_METST2.890e-2741.9830S ribosomal protein S13P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832494 ID=CF832494; Name=CF832494; organism=Citrus sinensis; type=EST; length=702bp
CGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCCTCACAATCGAAAATG
TCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGTGCTGAACAC
TAACGTCGACGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAATTAAGG
GTATTGGAAGGCGACTGGCTAACATCGTTTGCAAGAAAGCTGATGTTGAC
ATGAACAAGAGGGCCGGTGAACTATCTGCTGCTGAACTTGACAATCTCAT
GGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGATTGGTTCTTGA
ACAGACAGAAGGATTACAAGGATGGAAAGTATTCTCAGGTTGTATCCAAT
GCACTGGACATGAAGTTGAGAGATGACTTGGAGCGTCTGAAGAAGATCAG
GAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTCCGTGGACAAC
ACACCAAGACCACCGGCCGTCGTGGAAAGACTGTTGGTGTCTCCAAGAAG
CGTTGAGCTGTCCTTTATCAATGTTTTGAACAATCTATACACATGTTCAG
GAAGAGTTTGGACTTGCTATTGCTGAACATTTGCATCAGACAATATTAGA
TTTATTTTCTTTTCTTTGGATGGGTTTTAAGCATTTGAACTGTCTGTCTT
TTATCTATTATTTTCTCTATGGTAATATTTTTATTCAAAAAAAAAAAAAA
AA
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