CF832513

Overview
NameCF832513
Unique NameCF832513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GAT10_ARATH (GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.148e-26
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = -1
Query:  295 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQK 498
            RKC HC   KTPQWR GPMGPKTLCNACGVR+KSGRL PEYRPA SPTF+  LHSNSH+KV EMR ++
Sbjct:  229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMRNKR 296          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GATA5_ARATH (GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.166e-25
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = -1
Query:  298 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQ 504
            I R C HC    TPQWR GP GPKTLCNACGVRFKSGRLVPEYRPA+SPTF   +HSNSHRK++EMR++
Sbjct:  216 IVRICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRKIIEMRKK 284          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GATA8_ARATH (GATA transcription factor 8 OS=Arabidopsis thaliana GN=At3g45170 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.241e-22
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = -1
Query:  292 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 507
            I  + C HCG  KTP WR GP G  TLCNACG+R+++GRL+PEYRPA+SP F   +HSN HRKV+E+RR+++
Sbjct:  112 ITDKSCSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGRLLPEYRPASSPDFKPNVHSNFHRKVMEIRRERK 183          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GATA7_ARATH (Putative GATA transcription factor 7 OS=Arabidopsis thaliana GN=At2g28340 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = -1
Query:  304 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMR 495
            KC HC    TPQWR GP G KTLCNACG+RF+SGRLV EYRPA SPTF   +HSN H+K++ MR
Sbjct:  216 KCTHCETTTTPQWREGPNGRKTLCNACGIRFRSGRLVLEYRPAASPTFIPTVHSNLHKKIIYMR 279          
The following BLAST results are available for this feature:
BLAST of CF832513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GAT10_ARATH1.148e-2676.47GATA transcription factor 10 OS=Arabidopsis thalia... [more]
GATA5_ARATH2.166e-2573.91GATA transcription factor 5 OS=Arabidopsis thalian... [more]
GATA8_ARATH2.241e-2259.72GATA transcription factor 8 OS=Arabidopsis thalian... [more]
GATA7_ARATH2.098e-2067.19Putative GATA transcription factor 7 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01P15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832513 ID=CF832513; Name=CF832513; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTAAAGAATTAACACTCTTGACTTGCTTTCAATTCCTC
TGAGAACACATAAACCAGACAATAAAACACACATAAAAGCAGAATTTTTC
TAATTAAATTTTTTTTTCCCAAAACAAATTACCAAGTACTAAATCTATCT
GACTTGATTACAAGAAACCCACTAATCCTAAATAAGCTAAACTAAAGAAG
GGGGGAAAAAAATTAAAAAGGACCTACTAAAACTACTCTACCCTTTATCT
ACAGGCTTGACACCCAGCACCCCAAGCTCAATCCCCATCATTTGCTTCTG
TCTCCTCATCTCCACCACTTTTCTATGCGAGTTCGAGTGCAACTCGCTCG
AGAACGTCGGGCTGTTTGCCGGCCGGTACTCCGGCACCAGCCTGCCGGAC
TTAAACCGAACCCCACAAGCATTACAAAGCGTCTTTGGACCCATTGGCCC
AGCCCGCCATTGCGGGGTCTTCTCAGCGCCACAATGCTGACATTTTCTCC
CTATAATCACTTTCGAAACAACCGGTTTCGCAGCTTTCACACTCCCGTGA
ACACTCCCCCACCAGGCCTCCTGGTTCAGAAGCTCGCGGCGGCAACGCGT
GCGAAGCTTGCTCCGGGCACGCACCGGCACGCGCAGGTTCCCGCAGCAGT
TCATAATAATGCTGTTGCTATTGTTGTTACCATTGGTGATAGTGCTGCCA
TTAGTGCTTGTGCTTGAACTGCTGTTGCTGTTTTCTAGAACCGAATTTGG
GCTTTGCTGCTTTAAGATGTTGGGGTTAGAGGAAATGTCGACGAATGTTT
CAACTGTCGGAAAGTTCGAGAGCCATTCGAGTTCTTCTTCTGCACA
back to top