CF832519

Overview
NameCF832519
Unique NameCF832519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2855 contig Csv1_Contig2855:49..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_SALA4 (Carnitine operon protein caiE OS=Salmonella agona (strain SL483) GN=caiE PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.146e-21
Identity = 57/159 (35.85%), Postives = 93/159 (58.49%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 684
            PVV+ D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + ++DG  + + ++VAA + V+   +    ++  G+PAR LR++T++E+ +   +   Y +LA
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAMIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_SALCH (Carnitine operon protein caiE OS=Salmonella choleraesuis GN=caiE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.354e-21
Identity = 57/159 (35.85%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 684
            PVV+ D F+ PSA +IGDV VG G  I     LRGD     + +G+N+QD  ++H            TI+ +N  +GH A+LHGC V  +A VGM + ++DG  + + ++VAA + V+   +    ++  G+PAR LR++T++E+ +   +   Y +LA
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRQILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOUT (Carnitine operon protein caiE OS=Escherichia coli (strain UTI89 / UPEC) GN=caiE PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL6 (Carnitine operon protein caiE OS=Escherichia coli O6 GN=caiE PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL5 (Carnitine operon protein caiE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOK1 (Carnitine operon protein caiE OS=Escherichia coli O1:K1 / APEC GN=caiE PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECO45 (Carnitine operon protein caiE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HAA
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_SALPB (Carnitine operon protein caiE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiE PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 56/159 (35.22%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 684
            PVV+ D F+ PSA +IGDV VG G  I     LRGD   + + +G+N+Q   ++H            TI+ +N  +GH A+LHGC V  +A VGM + ++DG  + + ++VAA + V+   +    ++  G+PAR LR++T++E+ +   +   Y +LA
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQYGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOSM (Carnitine operon protein caiE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLLVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLU (Carnitine operon protein caiE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169          
The following BLAST results are available for this feature:
BLAST of CF832519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_SALA41.146e-2135.85Carnitine operon protein caiE OS=Salmonella agona ... [more]
CAIE_SALCH4.354e-2135.85Carnitine operon protein caiE OS=Salmonella choler... [more]
CAIE_ECOUT5.687e-2135.15Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL65.687e-2135.15Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL55.687e-2135.15Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOK15.687e-2135.15Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO455.687e-2135.15Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SALPB1.267e-2035.22Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_ECOSM1.267e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLU1.267e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832519 ID=CF832519; Name=CF832519; organism=Citrus sinensis; type=EST; length=862bp
GGCCCCTTCTCTGTAATCGAAGATCTTTGATTTGATTCTGAGCTGACAGC
GATGGGAACGCTGGGGAAAGCAATATACAGCGTTGGATTCTGGATCCGTG
AAACCGGTCAAGCCCTTGATCGTCTCGGTTGCCGCCTCCAAGGCAACTAC
TACTTCCAAGAACAGCTCTCCAGGCATCGAACACTCATGAACATTTTTGA
CAAAGCTCCTGTTGTTAACAAGGATGTATTTTTGGCTCCTAGTGCATCTA
TCATTGGTGATGTTCAGGTGGGCCGAGGTTCTTCCATTTGGTATGGATGT
GTTTTGAGAGGTGATGTTAACAGCATCAGCATTGGATCAGGAACCAATAT
ACAAGACAATTCCCTTGTTCATGTGGCAAAATCAAATTTAGCTGGGAAGG
TTTTACCTACTATCATTGGAGATAATGTTACTGTTGGTCACAGTGCTGTC
TTGCATGGATGTACTGTTGAGGATGAGGCTTTTGTTGGTATGGGTGCTAC
TTTGCTGGATGGTGTTTATGTTGAGAAACATGCTATGGTTGCTGCTGGAG
CTCTTGTAAGGCAGAACACAAAGATTCCATGTGGGGAGGTTTGGGGAGGT
AATCCAGCTAGGTTCCTCAGAAAGCTCACAGAAGAAGAGATGGCCTTTAT
TTCCCAGTCAGCCATAAATTATTCCAATTTGGCACGGGTTCACGCAGCTG
AAAATGCGAAGAGCTTTGACGAAATTGAGTTTGAGAAGCTGCTTCGCAAG
AAATTTGCTCGTCGTGATGAGGAGTATGATTCAATGCTTGGTGTTGTTCG
CGAAACCCCTGCTGAGCTCATACTTCCTGATAACGTGATGCAAGATAAAG
TGCCAAAAACAG
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