CF832519

Overview
NameCF832519
Unique NameCF832519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2855 contig Csv1_Contig2855:49..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECO81 (Carnitine operon protein caiE OS=Escherichia coli O81 (strain ED1a) GN=caiE PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECO27 (Carnitine operon protein caiE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECO7I (Carnitine operon protein caiE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAISFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDLVGRCHAS 169
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECO5E (Carnitine operon protein caiE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECO57 (Carnitine operon protein caiE OS=Escherichia coli O157:H7 GN=caiE PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_SHIFL (Carnitine operon protein caiE OS=Shigella flexneri GN=caiE PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_SHIF8 (Carnitine operon protein caiE OS=Shigella flexneri serotype 5b (strain 8401) GN=caiE PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ESCF3 (Carnitine operon protein caiE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R H A
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELRWKHLNTKEYQDLVGRCHVA 169
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_SHISS (Carnitine operon protein caiE OS=Shigella sonnei (strain Ss046) GN=caiE PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169
[Close]
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOHS (Carnitine operon protein caiE OS=Escherichia coli O9:H4 (strain HS) GN=caiE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 1 
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169
The following BLAST results are available for this feature:
BLAST of CF832519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_ECO811.267e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO271.267e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO7I1.655e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO5E1.655e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO571.655e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SHIFL2.161e-2034.55Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_SHIF82.161e-2034.55Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_ESCF32.161e-2034.55Carnitine operon protein caiE OS=Escherichia fergu... [more]
CAIE_SHISS2.822e-2034.55Carnitine operon protein caiE OS=Shigella sonnei (... [more]
CAIE_ECOHS2.822e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832519 ID=CF832519; Name=CF832519; organism=Citrus sinensis; type=EST; length=862bp
GGCCCCTTCTCTGTAATCGAAGATCTTTGATTTGATTCTGAGCTGACAGC
GATGGGAACGCTGGGGAAAGCAATATACAGCGTTGGATTCTGGATCCGTG
AAACCGGTCAAGCCCTTGATCGTCTCGGTTGCCGCCTCCAAGGCAACTAC
TACTTCCAAGAACAGCTCTCCAGGCATCGAACACTCATGAACATTTTTGA
CAAAGCTCCTGTTGTTAACAAGGATGTATTTTTGGCTCCTAGTGCATCTA
TCATTGGTGATGTTCAGGTGGGCCGAGGTTCTTCCATTTGGTATGGATGT
GTTTTGAGAGGTGATGTTAACAGCATCAGCATTGGATCAGGAACCAATAT
ACAAGACAATTCCCTTGTTCATGTGGCAAAATCAAATTTAGCTGGGAAGG
TTTTACCTACTATCATTGGAGATAATGTTACTGTTGGTCACAGTGCTGTC
TTGCATGGATGTACTGTTGAGGATGAGGCTTTTGTTGGTATGGGTGCTAC
TTTGCTGGATGGTGTTTATGTTGAGAAACATGCTATGGTTGCTGCTGGAG
CTCTTGTAAGGCAGAACACAAAGATTCCATGTGGGGAGGTTTGGGGAGGT
AATCCAGCTAGGTTCCTCAGAAAGCTCACAGAAGAAGAGATGGCCTTTAT
TTCCCAGTCAGCCATAAATTATTCCAATTTGGCACGGGTTCACGCAGCTG
AAAATGCGAAGAGCTTTGACGAAATTGAGTTTGAGAAGCTGCTTCGCAAG
AAATTTGCTCGTCGTGATGAGGAGTATGATTCAATGCTTGGTGTTGTTCG
CGAAACCCCTGCTGAGCTCATACTTCCTGATAACGTGATGCAAGATAAAG
TGCCAAAAACAG
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