CF832519

Overview
NameCF832519
Unique NameCF832519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2855 contig Csv1_Contig2855:49..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECO8A (Carnitine operon protein caiE OS=Escherichia coli O8 (strain IAI1) GN=caiE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECO55 (Carnitine operon protein caiE OS=Escherichia coli (strain 55989 / EAEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECO24 (Carnitine operon protein caiE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLC (Carnitine operon protein caiE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiE PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 56/165 (33.94%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            P+V+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PIVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLIGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLI (Carnitine operon protein caiE OS=Escherichia coli (strain K12) GN=caiE PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.814e-20
Identity = 56/165 (33.94%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R H +
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDLVGRCHVS 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECODH (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / DH10B) GN=caiE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.814e-20
Identity = 56/165 (33.94%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R H +
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDLVGRCHVS 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_ECOBW (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / BW2952) GN=caiE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.814e-20
Identity = 56/165 (33.94%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+   +    ++  G PAR +R ++++E+ +   +   Y +L  R H +
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDLVGRCHVS 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_SHIDS (Carnitine operon protein caiE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiE PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.120e-19
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL-ARVHAA 699
            PVV+   F+ PSA +IG V VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR +R ++++E+ +   +   Y +L  R HA+
Sbjct:   11 PVVHPTAFVHPSAVLIGYVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_CITK8 (Carnitine operon protein caiE OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiE PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 54/159 (33.96%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNLA 684
            PVV+ + ++ PSA +IGDV VG G  I     LRGD   + + +G N+QD  ++H            TI+ +N  +GH A+LHGC +  +A VGM + ++DG  + + ++VAA + V+        ++  G PAR  R +T+EE+ +   +   Y +LA
Sbjct:   11 PVVHPEAYVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGANLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVIGRDALVGMNSVIMDGAIIGEESIVAAMSFVKAGFVGAPRQLLVGAPARVKRDVTDEELHWKRLNTQEYQDLA 163          
BLAST of CF832519 vs. ExPASy Swiss-Prot
Match: CAIE_PROSL (Carnitine operon protein caiE OS=Proteus sp. (strain LE138) GN=caiE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.450e-18
Identity = 47/158 (29.75%), Postives = 89/158 (56.33%), Query Frame = 1
Query:  208 PVVNKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTKIPCGEVWGGNPARFLRKLTEEEMAFISQSAINYSNL 681
            PVV+   ++ PSA +IGDV +G G  I     LRGD   + + +G N+QD  ++H          + TI+ +N  +GH A+LH C +  ++ VGM + ++DG  + + ++VAA + V+   +    ++  G+PA+ +R +++++M +   +   Y +L
Sbjct:   11 PVVHPTAYIHPSAVLIGDVIIGAGVYIGPLASLRGDYGRLIVEAGANLQDGCVMHGYTD------MDTIVQENGHIGHGAILHSCIIGRDSLVGMNSVIMDGAIIGEESIVAAMSFVKAGFQGQARQMLMGSPAKHVRDISDQDMQWKRMNTREYQDL 162          
The following BLAST results are available for this feature:
BLAST of CF832519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_ECO8A2.822e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO552.822e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO242.822e-2034.55Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLC3.686e-2033.94Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLI4.814e-2033.94Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECODH4.814e-2033.94Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOBW4.814e-2033.94Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SHIDS3.120e-1933.94Carnitine operon protein caiE OS=Shigella dysenter... [more]
CAIE_CITK85.323e-1933.96Carnitine operon protein caiE OS=Citrobacter koser... [more]
CAIE_PROSL3.450e-1829.75Carnitine operon protein caiE OS=Proteus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832519 ID=CF832519; Name=CF832519; organism=Citrus sinensis; type=EST; length=862bp
GGCCCCTTCTCTGTAATCGAAGATCTTTGATTTGATTCTGAGCTGACAGC
GATGGGAACGCTGGGGAAAGCAATATACAGCGTTGGATTCTGGATCCGTG
AAACCGGTCAAGCCCTTGATCGTCTCGGTTGCCGCCTCCAAGGCAACTAC
TACTTCCAAGAACAGCTCTCCAGGCATCGAACACTCATGAACATTTTTGA
CAAAGCTCCTGTTGTTAACAAGGATGTATTTTTGGCTCCTAGTGCATCTA
TCATTGGTGATGTTCAGGTGGGCCGAGGTTCTTCCATTTGGTATGGATGT
GTTTTGAGAGGTGATGTTAACAGCATCAGCATTGGATCAGGAACCAATAT
ACAAGACAATTCCCTTGTTCATGTGGCAAAATCAAATTTAGCTGGGAAGG
TTTTACCTACTATCATTGGAGATAATGTTACTGTTGGTCACAGTGCTGTC
TTGCATGGATGTACTGTTGAGGATGAGGCTTTTGTTGGTATGGGTGCTAC
TTTGCTGGATGGTGTTTATGTTGAGAAACATGCTATGGTTGCTGCTGGAG
CTCTTGTAAGGCAGAACACAAAGATTCCATGTGGGGAGGTTTGGGGAGGT
AATCCAGCTAGGTTCCTCAGAAAGCTCACAGAAGAAGAGATGGCCTTTAT
TTCCCAGTCAGCCATAAATTATTCCAATTTGGCACGGGTTCACGCAGCTG
AAAATGCGAAGAGCTTTGACGAAATTGAGTTTGAGAAGCTGCTTCGCAAG
AAATTTGCTCGTCGTGATGAGGAGTATGATTCAATGCTTGGTGTTGTTCG
CGAAACCCCTGCTGAGCTCATACTTCCTGATAACGTGATGCAAGATAAAG
TGCCAAAAACAG
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