CF832524

Overview
NameCF832524
Unique NameCF832524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7951 contig Csv1_Contig7951:426..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832524 vs. ExPASy Swiss-Prot
Match: SPB5_RAT (Serpin B5 OS=Rattus norvegicus GN=Serpinb5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 57/237 (24.05%), Postives = 101/237 (42.62%), Query Frame = 2 
Query:    8 SADNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGF--KVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSE---SKFLDHHLPSQRVEVG-DFRIPRFKISFGSEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 700
            S  + T+++  NA YF G W + F  S+TK+  F +    +  V  M  +    +   D    K++ LP++     +  SM   LP   +   T LEK+  +      L    PS          +P+FK+    +             F+      + M ++   K + VS++  +  +E+ E+G +         V  S +L  K +F ADHPF+F++R + T  ++F G   +P
Sbjct:  152 SISDQTKILVVNAAYFVGKWMKKFPESETKECPFRINKTDTKPVQMMNLEATFCLGNIDDINCKIIELPFQN----KHLSMLIVLPKDVEDESTGLEKIEKQLNPETLLQWTNPSTMANAKVKLSLPKFKVEKMIDPKASLESLGLKSLFNESTSDFSGMSET---KGVSVSNVIHRVCLEITEDGGDSIE------VPGSRILQHKDEFKADHPFLFIVRHNKTRNIVFLGKFSSP 375
The following BLAST results are available for this feature:
BLAST of CF832524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
SPB5_RAT8.902e-1124.05Serpin B5 OS=Rattus norvegicus GN=Serpinb5 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832524 ID=CF832524; Name=CF832524; organism=Citrus sinensis; type=EST; length=724bp
TCCTGGTTCAGCTGACAATTCAACCAGGCTCATCTTTGCAAATGCACTAT
ACTTCAAAGGAGCTTGGAATGAAACATTTGATTCATCAAAGACAAAAGAC
TATGACTTTCACCTTCTCAATGGAGGCTCCATTAAAGTGCCTTTCATGAC
TAGCAAGAAGAATCAGTTTGTGAGTGCCTTTGATGGTTTCAAAGTTTTAG
GGCTTCCTTACAAACAAGGTGAGGATAAACGCCGTTTCTCCATGTACTTT
TTCCTTCCGGATGCAAAAGATGGGCTGCCAACTTTACTAGAGAAGATGGG
ATCTGAATCTAAGTTTTTAGACCACCACCTTCCATCCCAAAGAGTAGAAG
TGGGCGACTTCAGGATTCCTAGGTTTAAGATTTCTTTTGGGAGTGAAGTT
TCTAAAGTCCTCAAGGGATTAGGACTAGTGTTGCCTTTTTCTGGTGAAGG
AGGTGGTTTGGCAGAGATGGTGGATTCCCCTGTGGGTAAGAACCTATATG
TTTCAAGTATCTTCCAGAAGTCCTTCATAGAAGTTAATGAAGAAGGAACG
GAAGCTGCAGCTGCTTCGGCAGCTACTGTAGTACTTAGGTCGATAGTTCT
TTCAGATAAGATAGATTTTGTAGCTGACCACCCATTTGTGTTCATGATAA
GAGAAGACATGACTGGTTTGGTGATGTTCACTGGTCATGTCCTCAATCCT
CTTGCTGGCTGATTAATACTCATA
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