CF832525

Overview
NameCF832525
Unique NameCF832525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.211e-21
Identity = 63/189 (33.33%), Postives = 103/189 (54.50%), Query Frame = -1
Query:  284 NFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA---DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVV-KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 835
            NF  V    +++ YIGES   +R +F  ARD +PC++F DE+D++  +R ++G S    DR + + L EL     G    G V +I ATNRPD+LDPALLRPGR D+ + + + +    ++ I++        H  +   +V  +L   + GAD   +C++A + A+  +   V  +     +R+LN A
Sbjct: 1051 NFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAERLPFTYTGADFYALCSDAMLKAVTRQATLVDTK-----IRELNAA 1234          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.194e-21
Identity = 55/161 (34.16%), Postives = 93/161 (57.76%), Query Frame = -1
Query:  353 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR-FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 832
            FL    S+  +  +G  A  IR++F  A+ + PC++F+DEID++GG R FS       +   T+ +LL ++DGF     + ++ ATN+ +VLD ALLRPGR D +I +  P  + R+ +L ++   +     ID E +     G+ GAD++N+  +A ++A
Sbjct:  227 FLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNRTFSPHHPFANQ---TINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAA 384          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PEX6_RAT (Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.477e-21
Identity = 66/192 (34.38%), Postives = 100/192 (52.08%), Query Frame = -1
Query:  263 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQ-SRMEILKIHAAGIAKHGEIDYEAVVKLA-EGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSA 832
            FL V    +I+ Y+G+S   +RE+F  AR   PCIIF DE+D++   R   G S    + R + +LL +LDG      V +I ATNRPD+LDPALLRPGR D+ + +    ++ S++ +L            +    V+        GADL ++C++A M+A++            + VR L E  +  SSA
Sbjct:  763 FLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGG-VMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLCSDAMMTALK------------RRVRDLEEGLEPRSSA 941          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.477e-21
Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = -1
Query:  347 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-IAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 805
            + K++GES R +R +F  A   +P IIF DEID +   R S        I  TL+ L+   DG D  G++ +I ATNR D +DPAL RPGR DR+    LP++++R  IL+IH      K  +     + +   G+ GAD++ +CTEA + A+R
Sbjct:  476 LSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALM---DGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQKARKHILQIHTRDWNPKLSDAFLGELAEKCVGYCGADIKALCTEAALIALR 626          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.153e-21
Identity = 61/166 (36.75%), Postives = 92/166 (55.42%), Query Frame = -1
Query:  347 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-AKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 838
            ANF+ +  S+I+DK+ GES +++  MF  A   QPCIIF+DEID+       E +S D E+  TL  E +   DG    G+V +I ATNR + +D A LR  RL ++  + LP    R +IL +          E D + +    +GF+G+DL+ +C EA + A +
Sbjct:  152 ANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSF----LRERSSTDHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR--RLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAK 311          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.342e-21
Identity = 64/196 (32.65%), Postives = 106/196 (54.08%), Query Frame = -1
Query:  257 NFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK-VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVVK-LAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 835
            NF  V    +++ YIGES   +R +F  ARD +PC+IF DE+D++  +R ++G S    + R + +LL +LDG    G  V +I ATNRPD+LD ALLRPGR D+ I + + +  + +  I++          +I+++ +V      + GAD   +C++A + A+       I ++  + V K N+      S  Y
Sbjct:  778 NFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDEVDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFDELVSDFPFSYTGADFYALCSDAMLKAMTR-----ISKEIDEKVDKYNQDNGTSISIRY 967          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.342e-21
Identity = 68/217 (31.34%), Postives = 110/217 (50.69%), Query Frame = -1
Query:  242 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG--FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI-LKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAER---------------DYVIHEDFMKAVRKLNEAKKLESSAHYNADFG 838
            A F  + +S++  K++GE  +++R +F  AR HQP +IF+DEID++  +R   G       +R   E L QLDG       ++ ++ ATNRP  +D A  R  RL +++ IPLP   +R +I + + +       E + EA+V  A+GF+GAD+  +C EA +  IR+ +                Y+  +     VR     K LE   ++N  FG
Sbjct:  441 ATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQR---GEGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDISTITAEQVRPIAYIDFQSAFLVVRPSVSQKDLELYENWNKTFG 652          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.220e-20
Identity = 63/169 (37.28%), Postives = 101/169 (59.76%), Query Frame = -1
Query:  347 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDG----FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 838
            + F  V S+ +  K+ G+S +++R +F  AR + P IIF+DEID +GG+R   G S + E  R +  E L Q+DG    FD   +V ++ ATN P  LD AL R  R +++I IPLP+  +R ++++    G  K  EI+Y+ +    EGF+GAD+ ++C  A ++ +R
Sbjct:  252 STFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQR---GNSGEHEASRRVKSEFLVQMDGSQNKFDS-RRVFVLAATNIPWELDEALRR--RFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLR 414          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.220e-20
Identity = 65/185 (35.14%), Postives = 105/185 (56.76%), Query Frame = -1
Query:  302 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM--ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDY--EAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYV--IHEDFMKAV 838
            A F  + +S++  K++GE  +L+R +F  AR   P +IF+DEID++   R      + R I+    E L QLDG +     ++++  ATNRP  LD A  R  R  +++ I LP   SR +I++    G  +H   D+  E + +L +G++GAD+R +CTEA M  IR   D +  I++D ++AV
Sbjct:  375 ATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSESEHESSRRIK---TEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPDSRTQIVENLLRG-TRHEITDHNLEKIRRLTDGYSGADMRQLCTEAAMGPIREIGDQIATINKDDIRAV 553          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.594e-20
Identity = 67/220 (30.45%), Postives = 118/220 (53.64%), Query Frame = -1
Query:  242 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDFMKAVRKLN---EAKKLESSAHYNADFG 838
            A F  + ++++  KY+GE  +L+R +F  AR+ QP IIF+DE+D++   R      A R ++    E L + DG    G  +V ++ ATNRP  LD A+LR  R  +++ + LPNE++R+ +LK     ++K G    E +   + +L EG++G+D+  +  +A +  IR            +E   + + DF+ +++K+        LES   +N +FG
Sbjct:  388 ATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASRRLK---TEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLLLLK---NLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKNMAASEMRNIKYSDFLSSLKKIKCSVSPSTLESYIRWNKEFG 599          
The following BLAST results are available for this feature:
BLAST of CF832525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
PEX6_NEUCR3.211e-2133.33Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
YME1_SCHMA4.194e-2134.16Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
PEX6_RAT5.477e-2134.38Peroxisome assembly factor 2 OS=Rattus norvegicus ... [more]
ATD2B_HUMAN5.477e-2138.96ATPase family AAA domain-containing protein 2B OS=... [more]
MSP1_YEAST7.153e-2136.75Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
PEX6_CANGA9.342e-2132.65Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
FIGL1_XENLA9.342e-2131.34Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]
MEI1_CAEEL1.220e-2037.28Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
FIGL1_CAEBR1.220e-2035.14Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
SPAST_XENTR1.594e-2030.45Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832525 ID=CF832525; Name=CF832525; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTGAGAATCGGTGGAAATCACTGAAACCATCAATA
CATTAAAGATGTGCAACAATTTCTGACGTAAATGATTGTTATAATATATA
GAGCATTCCATCGCTCAAAGAACCACTAACTTCACAAATTAAAGCAAGAT
GTTTTAACAAAAATATGAAAACAATTACATCTGAAAAATAACCGCACTGC
CTCAAGATCCTTGGCTCTTTTCCTAAATGTTTTTACTCTTTTCCAAAATC
AGCATTGTAGTGAGCACTTGATTCAAGTTTCTTTGCCTCGTTCAGTTTCC
GGACAGCCTTCATAAAATCTTCGTGGATGACATAATCACGTTCAGCACGG
ATTGCCGACATTCCAGCCTCGGTGCAAACATTTCGGAGATCAGCCCCATT
AAAGCCCTCTGCAAGCTTCACAACAGCCTCATAATCAATCTCACCATGCT
TAGCAATGCCAGCAGCATGAATTTTAAGAATTTCCATTCTTGACTGCTCA
TTTGGCAATGGAATCTCAATTTTCCTATCCAGTCGCCCTGGACGAAGAAG
TGCAGGGTCAAGGACATCAGGTCTGTTAGTGGCCATTATCATTTTAACCT
TCCCAAGCTGATCAAATCCATCAAGCTGATTAAGTAACTCCATCAGTGTC
CTTTGAATTTCACGATCTGCACTGGTTCCTTCACTAAAACGGCGTCCACC
GATGGCATCAATTTCATCCATAAAAATGATGCAGGGTTGATGATCACGTG
CATATCCAAACATCTCTCTTATCAACCTTGCACTTTCCCCAATGTACTTA
TCAATAATGGCACTTGAAACCACCTTCAGAAAATTTGC
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