CF832525

Overview
NameCF832525
Unique NameCF832525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 59/165 (35.76%), Postives = 98/165 (59.39%), Query Frame = -1
Query:  347 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-AKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 838
            + F  V SS ++ K++GES +L++++F  AR+++P IIF+DE+DA+ G R    + A R I+  L+  +N + G D  G V ++ ATN P  LD A+ R  R +R+I IPLP+  +R  + +I+         + DY  +  + EG++G+D+  V  +A M  IR
Sbjct:  192 STFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 352          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 63/221 (28.51%), Postives = 114/221 (51.58%), Query Frame = -1
Query:  242 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEAVVKLA---EGFNGADLRNVCTEAGMSAIR------------------AERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFG 838
            A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G  +  ++ ++ ATNRP  LD A LR  R  +++ + LP  Q+R  +L   +  + K G  +D EA+ +LA   +G++G+DL  +  +A +  IR                   E+D+    + +K +R+    + L S   ++ D+G
Sbjct:  553 ATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPGVQTRELLL---SRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRPITEKDF---HNSLKRIRRSVAPQSLNSYEKWSQDYG 765          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 67/215 (31.16%), Postives = 114/215 (53.02%), Query Frame = -1
Query:  242 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA-----------ERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 832
            F  + SS++  KY+G+  +L+R +F  A   QP IIF+DEID++   R S  + A R ++    E+L Q DG    G  +V ++ ATNRP+ LD A LR  RL ++I + LP  ++R++I++ H     +H   +    ++ ++ +G++G DL  +C +A    IR            E   +  +DF   +K +R    ++ L+S   +N  FG
Sbjct:  445 FFSISSSSLTSKYVGDGEKLVRALFAVATHFQPSIIFIDEIDSLLTERSSNESEASRRLK---TEILVQFDGARTNGDERVLVMGATNRPEDLDDAALR--RLVKRIYVGLPELETRLQIIQ-HLLVGQRHSLTKQQINSLAEVTQGYSGFDLAALCKDAAYEPIRRLGIGIKDLELNEISLISFKDFANSLKQIRPSVTSQSLKSFEKWNQKFG 653          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 63/197 (31.98%), Postives = 105/197 (53.30%), Query Frame = -1
Query:  260 IIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAIGGRRFS--EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAH 808
            ++ K++GE+ + +R++F  A   Q          +I  DEIDAI   R S  +GT     I   + +LL ++DG + L  V +I  TNR D+LD ALLRPGRL+ ++EI LP+E  R++IL+IH   + ++     +I+ + +    + ++GA+L  V   A   A+  +   +  +D  K V + N    +E   H
Sbjct:  287 VLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDGTGVHDSI---VNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNYSGAELEGVVKSATSYALNRQ---LSMDDLTKPVEEENIKITMEDFLH 477          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.492e-18
Identity = 62/218 (28.44%), Postives = 114/218 (52.29%), Query Frame = -1
Query:  242 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEA---VVKLAEGFNGADLRNVCTEAGMSAIRA------------ERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 838
            A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G     ++ ++ ATNRP  LD A LR  R  +++ + LP+EQ+R  +L      + K G  +D +A   + K+ +G++G+DL  +  +A +  IR                ++  +DF   +K +R+    + L S   +++D+G
Sbjct:  572 ATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLN---RLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAQQSLSSYEKWSSDYG 784          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.492e-18
Identity = 63/221 (28.51%), Postives = 114/221 (51.58%), Query Frame = -1
Query:  242 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEAVVKLA---EGFNGADLRNVCTEAGMSAIR------------------AERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFG 838
            A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G  +  ++ ++ ATNRP  LD A LR  R  +++ + LP  Q+R  +L   +  + K G  +D EA+ +LA   +G++G+DL  +  +A +  IR                   E+D+    + +K +R+    + L S   ++ D+G
Sbjct:  549 ATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPEVQTRELLL---SRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRPITEKDF---HNSLKRIRRSVAPQSLNSYEKWSQDYG 761          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PEX6_ASHGO (Peroxisomal biogenesis factor 6 OS=Ashbya gossypii GN=PEX6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 55/165 (33.33%), Postives = 94/165 (56.97%), Query Frame = -1
Query:  350 NFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK-VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVVKLAE-GFNGADLRNVCTEAGMSAI 835
            NF  V    +++ YIGES   +R +F  ARD +PC+IF DE+D++  +R ++G S    + R + +LL +LDG    G  + +I ATNRPD+LD ALLRPGR D+ + + + +  + +  IL+          ++  + +       + GAD   +C++A ++A+
Sbjct:  783 NFFSVKGPELLNMYIGESEANVRRVFQRARDAKPCVIFFDELDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGLSTGGDGLFVIGATNRPDLLDEALLRPGRFDKLLYLGISDTNEKQANILRALTRKFTLDPDVSLDDLAASCPFTYTGADFYALCSDAMLNAM 946          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 55/166 (33.13%), Postives = 98/166 (59.04%), Query Frame = -1
Query:  347 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 838
            + F  + SS ++ K++GES +L++ +F  AR+++P IIF+DEID++ G R    + A R I+   +  +  + G D  G + ++ ATN P VLD A+ R  R +++I IPLP   +R  + K+H  G  ++   E D+  + +  +G++GAD+  +  +A M  +R
Sbjct:  194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMRGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLH-LGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 53/165 (32.12%), Postives = 96/165 (58.18%), Query Frame = -1
Query:  347 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 838
            + F  + SS ++ K++GES +L++ +F  AR+++P IIF+DEID++ G R    + A R I+   +  +  + G D  G + ++ ATN P VLD A+ R  R +++I IPLP   +R  + ++H         E D++ + +  +G++GAD+  +  +A M  +R
Sbjct:  194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 55/166 (33.13%), Postives = 98/166 (59.04%), Query Frame = -1
Query:  347 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 838
            + F  + SS ++ K++GES +L++ +F  AR+++P IIF+DEID++ G R    + A R I+   +  +  + G D  G + ++ ATN P VLD A+ R  R +++I IPLP   +R  + K+H  G  ++   E D+  + +  +G++GAD+  +  +A M  +R
Sbjct:  194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLH-LGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354          
The following BLAST results are available for this feature:
BLAST of CF832525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
VPS4_YEAST1.142e-1835.76Vacuolar protein sorting-associated protein 4 OS=S... [more]
SPAST_DROVI1.142e-1828.51Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
SPAST_DICDI1.142e-1831.16Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
NSF_ARATH1.142e-1831.98Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]
SPAST_DROPS1.492e-1828.44Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROMO1.492e-1828.51Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
PEX6_ASHGO1.948e-1833.33Peroxisomal biogenesis factor 6 OS=Ashbya gossypii... [more]
VPS4B_PONAB2.544e-1833.13Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_MOUSE2.544e-1832.12Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN2.544e-1833.13Vacuolar protein sorting-associated protein 4B OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832525 ID=CF832525; Name=CF832525; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTGAGAATCGGTGGAAATCACTGAAACCATCAATA
CATTAAAGATGTGCAACAATTTCTGACGTAAATGATTGTTATAATATATA
GAGCATTCCATCGCTCAAAGAACCACTAACTTCACAAATTAAAGCAAGAT
GTTTTAACAAAAATATGAAAACAATTACATCTGAAAAATAACCGCACTGC
CTCAAGATCCTTGGCTCTTTTCCTAAATGTTTTTACTCTTTTCCAAAATC
AGCATTGTAGTGAGCACTTGATTCAAGTTTCTTTGCCTCGTTCAGTTTCC
GGACAGCCTTCATAAAATCTTCGTGGATGACATAATCACGTTCAGCACGG
ATTGCCGACATTCCAGCCTCGGTGCAAACATTTCGGAGATCAGCCCCATT
AAAGCCCTCTGCAAGCTTCACAACAGCCTCATAATCAATCTCACCATGCT
TAGCAATGCCAGCAGCATGAATTTTAAGAATTTCCATTCTTGACTGCTCA
TTTGGCAATGGAATCTCAATTTTCCTATCCAGTCGCCCTGGACGAAGAAG
TGCAGGGTCAAGGACATCAGGTCTGTTAGTGGCCATTATCATTTTAACCT
TCCCAAGCTGATCAAATCCATCAAGCTGATTAAGTAACTCCATCAGTGTC
CTTTGAATTTCACGATCTGCACTGGTTCCTTCACTAAAACGGCGTCCACC
GATGGCATCAATTTCATCCATAAAAATGATGCAGGGTTGATGATCACGTG
CATATCCAAACATCTCTCTTATCAACCTTGCACTTTCCCCAATGTACTTA
TCAATAATGGCACTTGAAACCACCTTCAGAAAATTTGC
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