CF832525

Overview
NameCF832525
Unique NameCF832525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 63/218 (28.90%), Postives = 112/218 (51.38%), Query Frame = -1
Query:  242 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEA---VVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 838
            A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G     ++ ++ ATNRP  LD A LR  R  +++ + LP+EQ+R  +L      + K G  +D EA   + K+ +G++G+DL     +A +  IR            +    +  +DF   +K +R+    + L S   ++ D+G
Sbjct:  542 ATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLN---RLLQKQGSPLDTEALRRLAKITDGYSGSDLTARPKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 754          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 62/218 (28.44%), Postives = 112/218 (51.38%), Query Frame = -1
Query:  242 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEA---VVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 838
            A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G     ++ ++ ATNRP  LD A LR  R  +++ + LP+ Q+R  +L      + K G  +D +A   + K+ EG++G+DL  +  +A +  IR            +    +  +DF   +K +R+    + L S   ++ D+G
Sbjct:  566 ATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDVQTRELLLN---RLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRQITEKDFHNSLKRIRRSVAPQSLNSYEKWSQDYG 778          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18
Identity = 54/167 (32.34%), Postives = 94/167 (56.29%), Query Frame = -1
Query:  350 NFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL---GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVVKLAE-GFNGADLRNVCTEAGMSAI 835
            NF  V    +++ YIGES   +R +F  ARD +PC+IF DE+D++  +R ++G S    + R + +LL +LDG         V ++ ATNRPD+LD ALLRPGR D+ + + + +  + + +I++           +D   + +     + GAD   +C++A ++A+
Sbjct:  873 NFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAM 1038          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18
Identity = 52/169 (30.77%), Postives = 99/169 (58.58%), Query Frame = -1
Query:  347 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK------IHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 832
            F  + +S I+ K+ G+S +L+R +F  AR H P  IF+DE++++  +R +         +R   ELL Q+DG  +   +  ++ A+N P  LD A+LR  RL+++I + LP++++R  +++       +++G+    ++DY  +    +G++G+D+R VC EA M  +R
Sbjct:  319 FFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVR 485          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18
Identity = 53/169 (31.36%), Postives = 96/169 (56.80%), Query Frame = -1
Query:  347 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK------HGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 832
            F  + +S I+ K+ G+S +L+R +F  AR H P  IF+DE++++  +R +          R   ELL Q+DG  +   +  ++ A+N P  LD A+LR  RL+++I + LP+ ++R  ++      ++K      H E++Y  + +  EG++G+D++ VC EA M  +R
Sbjct:  315 FFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVR 481          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18
Identity = 61/218 (27.98%), Postives = 113/218 (51.83%), Query Frame = -1
Query:  242 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEA---VVKLAEGFNGADLRNVCTEAGMSAIRA------------ERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 838
            A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G     ++ ++ ATNRP  LD A LR  R  +++ + LP+EQ+R  +L      + K G  +D +A   + K+ +G++G+DL  +  +A +  IR                ++  +DF   +K +R+    + L     +++D+G
Sbjct:  572 ATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLN---RLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAPQSLSLYEKWSSDYG 784          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 89.7373 bits (221), Expect = 2.154e-17
Identity = 57/216 (26.39%), Postives = 108/216 (50.00%), Query Frame = -1
Query:  242 ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK--IHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDFMKAVRKLNEAKKLESSAHYN---ADFG 838
            A F  + ++ +  KY+G+  +L+R +F  AR+ QP IIF+DE+D++   R S    A R ++   +   + L    +  ++ ++ ATNRP  LD A LR  R  +++ + LP+  +R  +L+  +   G +   + D   + +L EG++G+DL  +  +A +  IR             +   +   DF  +++++  +   +S A Y     DFG
Sbjct:  562 ATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSERSSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALR--RFPKRVYVTLPDRDTRELLLRRLLQKQG-SPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIRELNVEEVKNMDPTKLRSIRESDFHNSLKRIRRSVAPQSLAAYEKWLQDFG 774          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 54/171 (31.58%), Postives = 97/171 (56.73%), Query Frame = -1
Query:  347 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEIL--------KIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 832
            F  + +S I+ K+ G+S +L+R +F  AR H P  IF+DE++++  +R            R   ELL Q+DG  +   +  ++ A+N P  LD A+LR  RL+++I + LP++++R  ++        K HA  +  H +++Y  + +  EG++G+D++ VC EA M  +R
Sbjct:  316 FFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSQEARQAMIYHWLPPVSKNHA--LELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRPVR 482          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 60/171 (35.09%), Postives = 93/171 (54.39%), Query Frame = -1
Query:  347 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI------DYEAVVKLAEGFNGADLRNVCTEAGMSAIR 832
            F  + +S++  K++G+S + IR +F  AR+ QP IIF+DEID+I      E +  D E+ R +  E L Q DG       ++ +I ATNRP  LD A+LR  R  ++I + LP+E++R E++      + KH  +      D   +     GF+ +DL  +C EA M  IR
Sbjct:  300 FFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSI----LCERSEKDAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELI---TKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIR 461          
BLAST of CF832525 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 61/181 (33.70%), Postives = 89/181 (49.17%), Query Frame = -1
Query:  335 KVVSS-AIIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAI----GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA----VVKLAEGFNGADLRNVCTEAGMSAIRAERD 826
            KVVS  +I++KY+G+S   IR +F  A   Q          II  DE+DAI    G R+   G          + +LL  +DG + L  + +I  TNR D++D ALLRPGRL+  +EI LP+E  R +I KIH A +     +D +            ++GA++  V   A   A   + D
Sbjct:  287 KVVSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSRGSRQGDSGVG-----DSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVD 462          
The following BLAST results are available for this feature:
BLAST of CF832525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
SPAST_DROSI2.544e-1828.90Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]
SPAST_DROGR2.544e-1828.44Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
PEX6_PICAN3.323e-1832.34Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
KATL2_XENTR3.323e-1830.77Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
KATL2_HUMAN5.668e-1831.36Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
SPAST_DROPE7.402e-1827.98Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
SPAST_ANOGA2.154e-1726.39Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
KATL2_MOUSE2.813e-1731.58Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
SPAST_CAEEL4.798e-1735.09Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
NSF_DICDI8.184e-1733.70Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832525 ID=CF832525; Name=CF832525; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTGAGAATCGGTGGAAATCACTGAAACCATCAATA
CATTAAAGATGTGCAACAATTTCTGACGTAAATGATTGTTATAATATATA
GAGCATTCCATCGCTCAAAGAACCACTAACTTCACAAATTAAAGCAAGAT
GTTTTAACAAAAATATGAAAACAATTACATCTGAAAAATAACCGCACTGC
CTCAAGATCCTTGGCTCTTTTCCTAAATGTTTTTACTCTTTTCCAAAATC
AGCATTGTAGTGAGCACTTGATTCAAGTTTCTTTGCCTCGTTCAGTTTCC
GGACAGCCTTCATAAAATCTTCGTGGATGACATAATCACGTTCAGCACGG
ATTGCCGACATTCCAGCCTCGGTGCAAACATTTCGGAGATCAGCCCCATT
AAAGCCCTCTGCAAGCTTCACAACAGCCTCATAATCAATCTCACCATGCT
TAGCAATGCCAGCAGCATGAATTTTAAGAATTTCCATTCTTGACTGCTCA
TTTGGCAATGGAATCTCAATTTTCCTATCCAGTCGCCCTGGACGAAGAAG
TGCAGGGTCAAGGACATCAGGTCTGTTAGTGGCCATTATCATTTTAACCT
TCCCAAGCTGATCAAATCCATCAAGCTGATTAAGTAACTCCATCAGTGTC
CTTTGAATTTCACGATCTGCACTGGTTCCTTCACTAAAACGGCGTCCACC
GATGGCATCAATTTCATCCATAAAAATGATGCAGGGTTGATGATCACGTG
CATATCCAAACATCTCTCTTATCAACCTTGCACTTTCCCCAATGTACTTA
TCAATAATGGCACTTGAAACCACCTTCAGAAAATTTGC
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