CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ESCF3 (Ribosome-recycling factor OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=frr PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ECOUT (Ribosome-recycling factor OS=Escherichia coli (strain UTI89 / UPEC) GN=frr PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ECOSM (Ribosome-recycling factor OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frr PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ECOSE (Ribosome-recycling factor OS=Escherichia coli (strain SE11) GN=frr PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ECOLU (Ribosome-recycling factor OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=frr PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ECOLI (Ribosome-recycling factor OS=Escherichia coli (strain K12) GN=frr PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ECOLC (Ribosome-recycling factor OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frr PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ECOL6 (Ribosome-recycling factor OS=Escherichia coli O6 GN=frr PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ECOL5 (Ribosome-recycling factor OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frr PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ECOHS (Ribosome-recycling factor OS=Escherichia coli O9:H4 (strain HS) GN=frr PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 68/142 (47.89%), Postives = 103/142 (72.54%), Query Frame = -2 
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+P  L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++
Sbjct:   32 ASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEA 173
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_ESCF38.923e-3347.89Ribosome-recycling factor OS=Escherichia fergusoni... [more]
RRF_ECOUT8.923e-3347.89Ribosome-recycling factor OS=Escherichia coli (str... [more]
RRF_ECOSM8.923e-3347.89Ribosome-recycling factor OS=Escherichia coli (str... [more]
RRF_ECOSE8.923e-3347.89Ribosome-recycling factor OS=Escherichia coli (str... [more]
RRF_ECOLU8.923e-3347.89Ribosome-recycling factor OS=Escherichia coli O17:... [more]
RRF_ECOLI8.923e-3347.89Ribosome-recycling factor OS=Escherichia coli (str... [more]
RRF_ECOLC8.923e-3347.89Ribosome-recycling factor OS=Escherichia coli (str... [more]
RRF_ECOL68.923e-3347.89Ribosome-recycling factor OS=Escherichia coli O6 G... [more]
RRF_ECOL58.923e-3347.89Ribosome-recycling factor OS=Escherichia coli O6:K... [more]
RRF_ECOHS8.923e-3347.89Ribosome-recycling factor OS=Escherichia coli O9:H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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