CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_NITWN (Ribosome-recycling factor OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=frr PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32 Identity = 67/143 (46.85%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +MLD ++V+ YGS + L +A I+ P+ L +Q +DKS +K++EKAIV S+LG++P +G+V+RL +P+L ERRKEL KV K AE KVAVR++RRD L +KL+K ++SED+ K L++D+QK TD + +ID + Sbjct: 34 ASSSMLDPVQVDAYGSHMPLNQVATISVPEPRLLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAVRHVRRDGLDTLKKLEKNHEISEDDEKRLANDVQKATDSVISEIDQL 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DEIRA (Ribosome-recycling factor OS=Deinococcus radiodurans GN=frr PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32 Identity = 66/146 (45.21%), Postives = 104/146 (71.23%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 +NP +L KI V+YYGS + + +A I TPD +L+I P+D+ +L IEKAI SDLG+ PNN G+ I ++LP LT ERRK+L K AE+ ++AVRN+R+ AL ++++K + L ED +K +D+QK+TDEY+ +++S++++ Sbjct: 34 ANPGILKKIVVDYYGSQMPIDQVASITTPDPRTLVITPWDRGALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNLRKHAL---DEVKKVEGLGEDEIKRGEADVQKITDEYVARVESVFQK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORU7 (Ribosome-recycling factor OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=frr PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32 Identity = 60/146 (41.10%), Postives = 102/146 (69.86%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 +NPAM + + EYYG P + +A I+ P++ +LI+PY++S ++ IE AI +SDLG+ P NDG+V+R+T+PQLT ERR+E+ + + E+ K+A+RNIRR ++ K+QK+ ED V+ ++L+K+T Y+K++D + ++ Sbjct: 32 ANPAMFNSVIAEYYGVPTPITQMATISVPEARMMLIKPYEQSQIQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRREMVRQAKSKGEDAKIAIRNIRRHGMEQLAKIQKDGDAGEDEVRASENELEKITSNYVKQVDELVER 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORPD (Ribosome-recycling factor OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=frr PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32 Identity = 65/146 (44.52%), Postives = 104/146 (71.23%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 ++ +LD ++VEYYGSPV + +A +N D+ ++ +QPY+K +IEKAI SDLG+ P + G+ IR+ +P LT ERR++L+KVV + E+ K+AVRN+RR+A ++ +KL K+K++SED+ + D+QKLTD + +ID + Q Sbjct: 33 AHTGILDHVQVEYYGSPVPVSQVANVNLVDARTISVQPYEKPMAAAIEKAIRESDLGLNPMSLGDSIRVPMPALTEERRRDLTKVVKGEGEDAKIAVRNLRREANESLKKLVKDKEISEDDERRAQDDIQKLTDRNVTEIDKLITQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICBR (Ribosome-recycling factor OS=Rickettsia bellii (strain RML369-C) GN=frr PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32 Identity = 64/142 (45.07%), Postives = 101/142 (71.13%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD + VE YG + L +A + TPD+ ++ +Q +DKS + S+EKAI ++LG+TP++DG++IRL +P LT ERRKEL+K+ K E+ K+++RNIRRD + +K++K+ +++D L+ +QKLTDEY K+DS KQ Sbjct: 37 LLDSVTVEAYGDRMPLSQVASLTTPDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHKYGEDTKISLRNIRRDGNEELKKMEKDNIIAKDEHHSLAEQVQKLTDEYSSKVDSAIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICB8 (Ribosome-recycling factor OS=Rickettsia bellii (strain OSU 85-389) GN=frr PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32 Identity = 64/142 (45.07%), Postives = 101/142 (71.13%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD + VE YG + L +A + TPD+ ++ +Q +DKS + S+EKAI ++LG+TP++DG++IRL +P LT ERRKEL+K+ K E+ K+++RNIRRD + +K++K+ +++D L+ +QKLTDEY K+DS KQ Sbjct: 37 LLDSVTVEAYGDRMPLSQVASLTTPDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHKYGEDTKISLRNIRRDGNEELKKMEKDNIIAKDEHHSLAEQVQKLTDEYSSKVDSAIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_POLNS (Ribosome-recycling factor OS=Polynucleobacter necessarius (strain STIR1) GN=frr PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32 Identity = 64/143 (44.76%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NP +L+ I V+YYG+P L +A + D+ ++ +QP++K+ + +IEKAI SDLG+ P + G VIR+ +P LT ERR+EL+KVV + E+ K+AVRN+RRDA + ++L K+K++SED+ + + D+QK+TD+ + ID I Sbjct: 33 ANPGILEHIHVDYYGNPTPLSQVASLGLADARTINVQPFEKTMVAAIEKAIRDSDLGLNPVSQGTVIRVPMPALTEERRRELTKVVKSEGEDAKIAVRNLRRDANEHLKRLTKDKEISEDDERRATDDIQKMTDKAVIDIDKI 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MANSM (Ribosome-recycling factor OS=Mannheimia succiniciproducens (strain MBEL55E) GN=frr PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32 Identity = 61/143 (42.66%), Postives = 104/143 (72.73%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 + P++LD I+V+YYGS L+ +A + D+ +L + +D+S ++++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E+GKVA+RN+RRDA + L K+K++SE++ + ++QK+TD Y+KK+D + Sbjct: 32 AQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLAVTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAIRNVRRDANDKIKALLKDKEISENDQRKAEEEIQKITDSYIKKVDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEPBL (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=frr PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32 Identity = 66/143 (46.15%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NP++++ I V+YYG+ + + I+ P+ L+I PYDK +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V ++EE KVA+RNIRRDA++ +K + LS+D +K + +QK TD Y+ KI ++ Sbjct: 33 ANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGLSQDEIKTIQDRIQKTTDSYIDKISAL 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEPBJ (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=frr PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32 Identity = 66/143 (46.15%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NP++++ I V+YYG+ + + I+ P+ L+I PYDK +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V ++EE KVA+RNIRRDA++ +K + LS+D +K + +QK TD Y+ KI ++ Sbjct: 33 ANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGLSQDEIKTIQDRIQKTTDSYIDKISAL 173 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |