CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_NITWN (Ribosome-recycling factor OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=frr PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32
Identity = 67/143 (46.85%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++ +MLD ++V+ YGS + L  +A I+ P+   L +Q +DKS +K++EKAIV S+LG++P  +G+V+RL +P+L  ERRKEL KV  K AE  KVAVR++RRD L   +KL+K  ++SED+ K L++D+QK TD  + +ID +
Sbjct:   34 ASSSMLDPVQVDAYGSHMPLNQVATISVPEPRLLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHKYAEAAKVAVRHVRRDGLDTLKKLEKNHEISEDDEKRLANDVQKATDSVISEIDQL 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DEIRA (Ribosome-recycling factor OS=Deinococcus radiodurans GN=frr PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32
Identity = 66/146 (45.21%), Postives = 104/146 (71.23%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +NP +L KI V+YYGS + +  +A I TPD  +L+I P+D+ +L  IEKAI  SDLG+ PNN G+ I ++LP LT ERRK+L K     AE+ ++AVRN+R+ AL   ++++K + L ED +K   +D+QK+TDEY+ +++S++++
Sbjct:   34 ANPGILKKIVVDYYGSQMPIDQVASITTPDPRTLVITPWDRGALNPIEKAIRDSDLGLNPNNKGDTIFISLPMLTEERRKDLVKNAKNYAEDARIAVRNLRKHAL---DEVKKVEGLGEDEIKRGEADVQKITDEYVARVESVFQK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORU7 (Ribosome-recycling factor OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=frr PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32
Identity = 60/146 (41.10%), Postives = 102/146 (69.86%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +NPAM + +  EYYG P  +  +A I+ P++  +LI+PY++S ++ IE AI +SDLG+ P NDG+V+R+T+PQLT ERR+E+ +    + E+ K+A+RNIRR  ++   K+QK+    ED V+   ++L+K+T  Y+K++D + ++
Sbjct:   32 ANPAMFNSVIAEYYGVPTPITQMATISVPEARMMLIKPYEQSQIQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRREMVRQAKSKGEDAKIAIRNIRRHGMEQLAKIQKDGDAGEDEVRASENELEKITSNYVKQVDELVER 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORPD (Ribosome-recycling factor OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=frr PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32
Identity = 65/146 (44.52%), Postives = 104/146 (71.23%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            ++  +LD ++VEYYGSPV +  +A +N  D+ ++ +QPY+K    +IEKAI  SDLG+ P + G+ IR+ +P LT ERR++L+KVV  + E+ K+AVRN+RR+A ++ +KL K+K++SED+ +    D+QKLTD  + +ID +  Q
Sbjct:   33 AHTGILDHVQVEYYGSPVPVSQVANVNLVDARTISVQPYEKPMAAAIEKAIRESDLGLNPMSLGDSIRVPMPALTEERRRDLTKVVKGEGEDAKIAVRNLRREANESLKKLVKDKEISEDDERRAQDDIQKLTDRNVTEIDKLITQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICBR (Ribosome-recycling factor OS=Rickettsia bellii (strain RML369-C) GN=frr PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 64/142 (45.07%), Postives = 101/142 (71.13%), Query Frame = -2
Query:  213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638
            +LD + VE YG  + L  +A + TPD+ ++ +Q +DKS + S+EKAI  ++LG+TP++DG++IRL +P LT ERRKEL+K+  K  E+ K+++RNIRRD  +  +K++K+  +++D    L+  +QKLTDEY  K+DS  KQ
Sbjct:   37 LLDSVTVEAYGDRMPLSQVASLTTPDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHKYGEDTKISLRNIRRDGNEELKKMEKDNIIAKDEHHSLAEQVQKLTDEYSSKVDSAIKQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICB8 (Ribosome-recycling factor OS=Rickettsia bellii (strain OSU 85-389) GN=frr PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 64/142 (45.07%), Postives = 101/142 (71.13%), Query Frame = -2
Query:  213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638
            +LD + VE YG  + L  +A + TPD+ ++ +Q +DKS + S+EKAI  ++LG+TP++DG++IRL +P LT ERRKEL+K+  K  E+ K+++RNIRRD  +  +K++K+  +++D    L+  +QKLTDEY  K+DS  KQ
Sbjct:   37 LLDSVTVEAYGDRMPLSQVASLTTPDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHKYGEDTKISLRNIRRDGNEELKKMEKDNIIAKDEHHSLAEQVQKLTDEYSSKVDSAIKQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_POLNS (Ribosome-recycling factor OS=Polynucleobacter necessarius (strain STIR1) GN=frr PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 64/143 (44.76%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP +L+ I V+YYG+P  L  +A +   D+ ++ +QP++K+ + +IEKAI  SDLG+ P + G VIR+ +P LT ERR+EL+KVV  + E+ K+AVRN+RRDA +  ++L K+K++SED+ +  + D+QK+TD+ +  ID I
Sbjct:   33 ANPGILEHIHVDYYGNPTPLSQVASLGLADARTINVQPFEKTMVAAIEKAIRDSDLGLNPVSQGTVIRVPMPALTEERRRELTKVVKSEGEDAKIAVRNLRRDANEHLKRLTKDKEISEDDERRATDDIQKMTDKAVIDIDKI 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MANSM (Ribosome-recycling factor OS=Mannheimia succiniciproducens (strain MBEL55E) GN=frr PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 61/143 (42.66%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + P++LD I+V+YYGS   L+ +A +   D+ +L +  +D+S ++++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GKVA+RN+RRDA    + L K+K++SE++ +    ++QK+TD Y+KK+D +
Sbjct:   32 AQPSLLDAIQVDYYGSATPLRQLANVVAEDARTLAVTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAIRNVRRDANDKIKALLKDKEISENDQRKAEEEIQKITDSYIKKVDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEPBL (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=frr PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 66/143 (46.15%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V  ++EE KVA+RNIRRDA++  +K    + LS+D +K +   +QK TD Y+ KI ++
Sbjct:   33 ANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGLSQDEIKTIQDRIQKTTDSYIDKISAL 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEPBJ (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=frr PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 66/143 (46.15%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V  ++EE KVA+RNIRRDA++  +K    + LS+D +K +   +QK TD Y+ KI ++
Sbjct:   33 ANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGLSQDEIKTIQDRIQKTTDSYIDKISAL 173          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_NITWN1.522e-3246.85Ribosome-recycling factor OS=Nitrobacter winograds... [more]
RRF_DEIRA1.522e-3245.21Ribosome-recycling factor OS=Deinococcus radiodura... [more]
RRF_CORU71.522e-3241.10Ribosome-recycling factor OS=Corynebacterium ureal... [more]
RRF_BORPD1.522e-3244.52Ribosome-recycling factor OS=Bordetella petrii (st... [more]
RRF_RICBR1.988e-3245.07Ribosome-recycling factor OS=Rickettsia bellii (st... [more]
RRF_RICB81.988e-3245.07Ribosome-recycling factor OS=Rickettsia bellii (st... [more]
RRF_POLNS1.988e-3244.76Ribosome-recycling factor OS=Polynucleobacter nece... [more]
RRF_MANSM1.988e-3242.66Ribosome-recycling factor OS=Mannheimia succinicip... [more]
RRF_LEPBL1.988e-3246.15Ribosome-recycling factor OS=Leptospira borgpeters... [more]
RRF_LEPBJ1.988e-3246.15Ribosome-recycling factor OS=Leptospira borgpeters... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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