CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORA7 (Ribosome-recycling factor OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=frr PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32 Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NPAM + + EYYG P + +A I+ P+ LLI+PY++S + IE AI +SDLG+ P NDG+V+R+T+PQLT ERR+++ K+ + E+GK+A+RNIRR A++ +KLQK+ ED V +++K+T Y++++D + Sbjct: 32 ANPAMFNGLVAEYYGVPTPITQMATISVPEPRMLLIKPYEQSVMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKMAKSKGEDGKIAIRNIRRRAMEQLKKLQKDGDAGEDEVIAAEKEMEKITSGYIEQVDKL 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BIFLI (Ribosome-recycling factor OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=frr PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32 Identity = 67/143 (46.85%), Postives = 99/143 (69.23%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NPA+L+ I V+YYG+P +K++A I P+ +L + P+D S ++EKA+ +SDLG++PN DG VIRLT+P+LT ERRKE K+ +AE+GKVAVRNIRR +A +K K+ ++ ED L DL K+T +ID++ Sbjct: 30 ANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGKVAVRNIRRKTKEALDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDAL 172
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SERP5 (Ribosome-recycling factor OS=Serratia proteamaculans (strain 568) GN=frr PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32 Identity = 68/142 (47.89%), Postives = 101/142 (71.13%), Query Frame = -2 Query: 225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650 ++P++LD I VEYYG+ L+ +A + DS +L I +D+S ++EKAI+SSDLG+ P++ G IR+ LP LT ERRK+L K+V +AE+G+VAVRN+RRDA + L K+K++SED + D+QKLTD Y+K +D+ Sbjct: 32 ASPSILDGIMVEYYGASTPLRQLASVTVEDSRTLKINVFDRSISAAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKIVRNEAEQGRVAVRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDA 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_COREF (Ribosome-recycling factor OS=Corynebacterium efficiens GN=frr PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32 Identity = 61/143 (42.66%), Postives = 99/143 (69.23%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NPAM + + EYYG P + ++ I+ P+ L+I+PY+ SS+ IE AI +SDLG+ P NDG+V+R+T+PQLT ERR+++ K+ + E+GK+A+RN+RR ++ +KLQK+ + ED V +L K+T Y++++D I Sbjct: 32 ANPAMFNGVLAEYYGVPTPITQMSSISVPEPRMLIIKPYEMSSMGVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKIAKGKGEDGKIAIRNVRRKGMEQLKKLQKDGEFGEDEVAAAEKELDKITAHYVEQVDEI 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURXL (Ribosome-recycling factor OS=Burkholderia xenovorans (strain LB400) GN=frr PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32 Identity = 65/143 (45.45%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD I+ +YYGSPV + +A + D+ ++ +QP++K + +EKAI SDLG+ P G+VIR+ +P LT ERR+EL+KVV +AE KVAVRN+RRDA + +KL K+K++SED+ + D+QKLTD ++ +ID + Sbjct: 33 AHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWEKKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDRFVAEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_UNCTG (Ribosome-recycling factor OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=frr PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32 Identity = 67/140 (47.86%), Postives = 104/140 (74.29%), Query Frame = -2 Query: 228 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 647 N A ++ I+VE YGS + + IA I+ D+ ++ I+P+D S L +IEKAI+ +D+GM+P NDG++IR+++P LT ERRKE++K + K AEE +VA+RN RR ++ +KL+K+K ++ED+ K L + QK+TD Y+KKID Sbjct: 34 NSAAIETIKVESYGSIMPINQIASISVSDARTIEIRPWDVSQLSAIEKAILKADIGMSPANDGKLIRVSVPHLTQERRKEIAKSIGKMAEEFRVAIRNERRVLVENIKKLEKDKVITEDDKKKLEVEAQKVTDGYIKKID 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEDO (Ribosome-recycling factor OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=frr PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32 Identity = 61/143 (42.66%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++LD I+V YYG+ LK +A + DS +L + +D+S ++++EKAI++SDLG+ P G +R+ LP LT ERRK+ KVV +AE G++A+RN+RRDA+ +KL+K K+ +ED+V+ ++QK TD ++K +D + Sbjct: 32 AHPSLLDSIQVSYYGAMSPLKQVANVGIEDSRTLSVTVFDRSMVQAVEKAIMTSDLGLNPMTAGATLRIPLPALTEERRKDFIKVVRNEAENGRIAIRNVRRDAISEVKKLEKAKECTEDDVRRSEDEVQKYTDAHIKNVDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICM5 (Ribosome-recycling factor OS=Rickettsia massiliae (strain Mtu5) GN=frr PE=3 SV=2) HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32 Identity = 64/142 (45.07%), Postives = 100/142 (70.42%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD + VE YGS + L +A ++TPD+ ++ +Q +DKS + S+EK I ++LG+TP DG++IRL +P LT ERR+EL K+ K E+ K+++RNIRRD + +KL+K+ +++D LS +QKLTD+Y K+DS+ KQ Sbjct: 37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPTLTEERRQELVKLAHKYGEDTKISLRNIRRDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICAE (Ribosome-recycling factor OS=Rickettsia africae (strain ESF-5) GN=frr PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32 Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD + VE YGS + L +A ++TPD+ ++ +Q +DKS + S+EK I ++LG+TP DG++IRL +P LT ERR EL K+ K E+ K+++RNIRRD +A +KL K+ +++D LS +QKLTD+Y K+DS+ KQ Sbjct: 37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKISLRNIRRDGNEALKKLAKDNVIAKDEHHSLSEQVQKLTDDYSNKVDSVIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RALEJ (Ribosome-recycling factor OS=Ralstonia eutropha (strain JMP134) GN=frr PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32 Identity = 66/139 (47.48%), Postives = 100/139 (71.94%), Query Frame = -2 Query: 222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638 +LD ++V+YYGS V + +A I D+ ++ +QP++K + ++EKAI DLG+ P GEVIR+ +P LT ERRKEL+KVV +AE K+AVRN+RRDA + ++KL K+K +SED+ + D+QKLTD+Y+ +ID + Sbjct: 37 LLDHVQVDYYGSMVPISQVANIGLGDARTITVQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPPLTEERRKELTKVVKGEAEGAKIAVRNLRRDANEQFKKLVKDKAISEDDERRGQDDVQKLTDKYVAEIDKM 175 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |