CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORA7 (Ribosome-recycling factor OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=frr PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPAM + +  EYYG P  +  +A I+ P+   LLI+PY++S +  IE AI +SDLG+ P NDG+V+R+T+PQLT ERR+++ K+   + E+GK+A+RNIRR A++  +KLQK+    ED V     +++K+T  Y++++D +
Sbjct:   32 ANPAMFNGLVAEYYGVPTPITQMATISVPEPRMLLIKPYEQSVMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKMAKSKGEDGKIAIRNIRRRAMEQLKKLQKDGDAGEDEVIAAEKEMEKITSGYIEQVDKL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BIFLI (Ribosome-recycling factor OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=frr PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 67/143 (46.85%), Postives = 99/143 (69.23%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPA+L+ I V+YYG+P  +K++A I  P+  +L + P+D S   ++EKA+ +SDLG++PN DG VIRLT+P+LT ERRKE  K+   +AE+GKVAVRNIRR   +A +K  K+ ++ ED    L  DL K+T     +ID++
Sbjct:   30 ANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKLAKGKAEDGKVAVRNIRRKTKEALDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDAL 172          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SERP5 (Ribosome-recycling factor OS=Serratia proteamaculans (strain 568) GN=frr PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32
Identity = 68/142 (47.89%), Postives = 101/142 (71.13%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I VEYYG+   L+ +A +   DS +L I  +D+S   ++EKAI+SSDLG+ P++ G  IR+ LP LT ERRK+L K+V  +AE+G+VAVRN+RRDA    + L K+K++SED  +    D+QKLTD Y+K +D+
Sbjct:   32 ASPSILDGIMVEYYGASTPLRQLASVTVEDSRTLKINVFDRSISAAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKIVRNEAEQGRVAVRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKLLDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_COREF (Ribosome-recycling factor OS=Corynebacterium efficiens GN=frr PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32
Identity = 61/143 (42.66%), Postives = 99/143 (69.23%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPAM + +  EYYG P  +  ++ I+ P+   L+I+PY+ SS+  IE AI +SDLG+ P NDG+V+R+T+PQLT ERR+++ K+   + E+GK+A+RN+RR  ++  +KLQK+ +  ED V     +L K+T  Y++++D I
Sbjct:   32 ANPAMFNGVLAEYYGVPTPITQMSSISVPEPRMLIIKPYEMSSMGVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMVKIAKGKGEDGKIAIRNVRRKGMEQLKKLQKDGEFGEDEVAAAEKELDKITAHYVEQVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURXL (Ribosome-recycling factor OS=Burkholderia xenovorans (strain LB400) GN=frr PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32
Identity = 65/143 (45.45%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD I+ +YYGSPV +  +A +   D+ ++ +QP++K  +  +EKAI  SDLG+ P   G+VIR+ +P LT ERR+EL+KVV  +AE  KVAVRN+RRDA +  +KL K+K++SED+ +    D+QKLTD ++ +ID +
Sbjct:   33 AHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWEKKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSEAETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDRFVAEIDKL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_UNCTG (Ribosome-recycling factor OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=frr PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32
Identity = 67/140 (47.86%), Postives = 104/140 (74.29%), Query Frame = -2
Query:  228 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 647
            N A ++ I+VE YGS + +  IA I+  D+ ++ I+P+D S L +IEKAI+ +D+GM+P NDG++IR+++P LT ERRKE++K + K AEE +VA+RN RR  ++  +KL+K+K ++ED+ K L  + QK+TD Y+KKID
Sbjct:   34 NSAAIETIKVESYGSIMPINQIASISVSDARTIEIRPWDVSQLSAIEKAILKADIGMSPANDGKLIRVSVPHLTQERRKEIAKSIGKMAEEFRVAIRNERRVLVENIKKLEKDKVITEDDKKKLEVEAQKVTDGYIKKID 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEDO (Ribosome-recycling factor OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=frr PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32
Identity = 61/143 (42.66%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   LK +A +   DS +L +  +D+S ++++EKAI++SDLG+ P   G  +R+ LP LT ERRK+  KVV  +AE G++A+RN+RRDA+   +KL+K K+ +ED+V+    ++QK TD ++K +D +
Sbjct:   32 AHPSLLDSIQVSYYGAMSPLKQVANVGIEDSRTLSVTVFDRSMVQAVEKAIMTSDLGLNPMTAGATLRIPLPALTEERRKDFIKVVRNEAENGRIAIRNVRRDAISEVKKLEKAKECTEDDVRRSEDEVQKYTDAHIKNVDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICM5 (Ribosome-recycling factor OS=Rickettsia massiliae (strain Mtu5) GN=frr PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32
Identity = 64/142 (45.07%), Postives = 100/142 (70.42%), Query Frame = -2
Query:  213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638
            +LD + VE YGS + L  +A ++TPD+ ++ +Q +DKS + S+EK I  ++LG+TP  DG++IRL +P LT ERR+EL K+  K  E+ K+++RNIRRD  +  +KL+K+  +++D    LS  +QKLTD+Y  K+DS+ KQ
Sbjct:   37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPTLTEERRQELVKLAHKYGEDTKISLRNIRRDGNEELKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICAE (Ribosome-recycling factor OS=Rickettsia africae (strain ESF-5) GN=frr PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32
Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = -2
Query:  213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638
            +LD + VE YGS + L  +A ++TPD+ ++ +Q +DKS + S+EK I  ++LG+TP  DG++IRL +P LT ERR EL K+  K  E+ K+++RNIRRD  +A +KL K+  +++D    LS  +QKLTD+Y  K+DS+ KQ
Sbjct:   37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKISLRNIRRDGNEALKKLAKDNVIAKDEHHSLSEQVQKLTDDYSNKVDSVIKQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RALEJ (Ribosome-recycling factor OS=Ralstonia eutropha (strain JMP134) GN=frr PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32
Identity = 66/139 (47.48%), Postives = 100/139 (71.94%), Query Frame = -2
Query:  222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638
            +LD ++V+YYGS V +  +A I   D+ ++ +QP++K  + ++EKAI   DLG+ P   GEVIR+ +P LT ERRKEL+KVV  +AE  K+AVRN+RRDA + ++KL K+K +SED+ +    D+QKLTD+Y+ +ID +
Sbjct:   37 LLDHVQVDYYGSMVPISQVANIGLGDARTITVQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPPLTEERRKELTKVVKGEAEGAKIAVRNLRRDANEQFKKLVKDKAISEDDERRGQDDVQKLTDKYVAEIDKM 175          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CORA71.988e-3243.36Ribosome-recycling factor OS=Corynebacterium aurim... [more]
RRF_BIFLI1.988e-3246.85Ribosome-recycling factor OS=Bifidobacterium longu... [more]
RRF_SERP52.596e-3247.89Ribosome-recycling factor OS=Serratia proteamacula... [more]
RRF_COREF2.596e-3242.66Ribosome-recycling factor OS=Corynebacterium effic... [more]
RRF_BURXL2.596e-3245.45Ribosome-recycling factor OS=Burkholderia xenovora... [more]
RRF_UNCTG3.391e-3247.86Ribosome-recycling factor OS=Uncultured termite gr... [more]
RRF_SHEDO3.391e-3242.66Ribosome-recycling factor OS=Shewanella denitrific... [more]
RRF_RICM53.391e-3245.07Ribosome-recycling factor OS=Rickettsia massiliae ... [more]
RRF_RICAE3.391e-3245.77Ribosome-recycling factor OS=Rickettsia africae (s... [more]
RRF_RALEJ3.391e-3247.48Ribosome-recycling factor OS=Ralstonia eutropha (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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