CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ARTAT (Ribosome-recycling factor OS=Arthrobacter aurescens (strain TC1) GN=frr PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32 Identity = 64/146 (43.84%), Postives = 100/146 (68.49%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 +NPA+ +K+ VEYYG+P L+ +A PD+ ++LI PYDK++L+ IEKA+ S++G P+NDG VIR+T+P+LT ERRKE K+V + E+ KV++R+IRR A + +KL K+ + ED +L LT +++ ID + K+ Sbjct: 32 ANPALYNKVIVEYYGTPTPLQQLASFGVPDARTILITPYDKTALRDIEKALSDSEVGANPSNDGNVIRVTIPELTKERRKEYVKIVKGKGEDAKVSIRSIRRKAKDSLDKLVKDGEAGEDEGARAEKELDALTKQHVDSIDELLKR 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THENN (Ribosome-recycling factor OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=frr PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32 Identity = 64/144 (44.44%), Postives = 105/144 (72.92%), Query Frame = -2 Query: 216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647 +PA+L++I+V+YYG P + +A I+ + +L+I+P+D+S L IEKAI +SDLG+ P NDG VIRL P T+E+R++ K + EEGK+A+RNIRR+ +K ++ QKE + ED+ + L +++QKLTDE+++K+D +++ Sbjct: 33 SPAILEEIKVDYYGVPTPVNQLATISVSEERTLVIKPWDRSVLSLIEKAINASDLGLNPVNDGNVIRLVFPTPTTEQREKWVKKAKEIVEEGKIAIRNIRREIMKKIKEDQKEGNIPEDDARRLENEVQKLTDEFIEKLDEVFE 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICRS (Ribosome-recycling factor OS=Rickettsia rickettsii (strain Sheila Smith) GN=frr PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32 Identity = 64/142 (45.07%), Postives = 99/142 (69.72%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD + VE YGS + L +A ++TPD+ ++ +Q +DKS + S+EK I ++LG+TP DG++IRL +P LT ERR EL K+ K E+ K+++RNIRRD + +KL+K+ +++D LS +QKLTD+Y K+DS+ KQ Sbjct: 37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKISLRNIRRDGNEVLKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICRO (Ribosome-recycling factor OS=Rickettsia rickettsii (strain Iowa) GN=frr PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32 Identity = 64/142 (45.07%), Postives = 99/142 (69.72%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD + VE YGS + L +A ++TPD+ ++ +Q +DKS + S+EK I ++LG+TP DG++IRL +P LT ERR EL K+ K E+ K+++RNIRRD + +KL+K+ +++D LS +QKLTD+Y K+DS+ KQ Sbjct: 37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKISLRNIRRDGNEVLKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICFE (Ribosome-recycling factor OS=Rickettsia felis GN=frr PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32 Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD + VE YGS + L +A ++TPD+ ++ +Q +DKS + S+EK I ++LG+TP DG++IRL +P LT ERRKEL K+ K E+ K+++RNIRRD + +KL+K+ +++D LS +QKLTD+Y K+DS KQ Sbjct: 37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKISLRNIRRDGNEELKKLEKDNIIAKDEHHSLSEQVQKLTDDYSSKVDSAIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_KOCRD (Ribosome-recycling factor OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=frr PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32 Identity = 66/145 (45.52%), Postives = 98/145 (67.59%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NPA+ + V YYG+P L+ +A TP++ +LLI PYD+S+L IEKA+ SD+G P NDG VIR+ +P+LT ERRKE K+V +AE+ +V+VRN+RR A +A EKL K+ + ED+ K DL T +++ ++D + K Sbjct: 32 ANPALFSSLLVAYYGTPTPLQQLASFQTPEARTLLITPYDRSALNDIEKALRDSDIGANPANDGNVIRVVMPELTEERRKEYVKIVHGKAEDARVSVRNVRRHAKEAIEKLVKDGDVGEDDGKRGEKDLDAATKKHIDQVDELLK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_XYLFA (Ribosome-recycling factor OS=Xylella fastidiosa GN=frr PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32 Identity = 67/145 (46.21%), Postives = 101/145 (69.66%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 ++P++LD I+++ YG+ L +A I+ + SL+I +DK+ K +EKAI +SDLG+TP G +IRL LP LT ERRKEL+KVV + E+ KVA+RNIRRDA + + + K K+++ED V+ D+QKLTD+ +K +D + K Sbjct: 32 ASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRQGEEDIQKLTDKAIKSVDEVVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THEM4 (Ribosome-recycling factor OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=frr PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32 Identity = 62/145 (42.76%), Postives = 104/145 (71.72%), Query Frame = -2 Query: 213 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 647 +PA+L++I+V+YYG P + +A +N + SL+I+P++K+ L ++EKAI +SDLG+ P NDG VIRL P T+E+R++ K E GK+AVRNIRR+ LK + L+K ++SED+ + L ++Q LTD+Y++++D ++++ Sbjct: 33 SPALLEEIKVDYYGVPTPINQVATVNVTEERSLIIKPWEKNLLNAVEKAIQASDLGLNPMNDGNVIRLVFPTPTTEQRQKWVKKAKDIVEHGKIAVRNIRREILKELKDLKKNGEISEDDERRLEKEIQNLTDKYVEELDKLFER 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_METFK (Ribosome-recycling factor OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=frr PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32 Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++VEYYGS V++ +A ++ D+ +L +Q Y+K+ +EKAI +DLG+ P +G++IR+ +P LT ERR++L KVV +AE KVA+RN+RRDA A +KL K+K++SED+ + ++QKLTD+++ +ID + Sbjct: 32 AHTGLLDHVQVEYYGSMVAINQVASVSLGDARTLNVQAYEKNMTPKVEKAIRDADLGLNPATNGDIIRVPMPMLTEERRRDLVKVVRSEAENAKVAIRNVRRDANDALKKLVKDKEISEDDERRAQDEVQKLTDKFVAEIDKL 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_METCA (Ribosome-recycling factor OS=Methylococcus capsulatus GN=frr PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32 Identity = 65/146 (44.52%), Postives = 103/146 (70.55%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 ++P++L+ I V YYG+ V L +A + D+ SL + P++++ +++IEKAI++SDLG+ P+ G VIR+ LP LT ERR++L KVV ++AE G+VA+RNIRRDA + KEK +SED + +QK TD+++K+ID + +Q Sbjct: 32 AHPSLLEHIRVSYYGNEVPLTQVANVAVEDARSLAVTPWERNMVQAIEKAIMTSDLGLNPSTAGTVIRVPLPPLTEERRRDLIKVVRQEAENGRVAIRNIRRDANNELKAALKEKLISEDEDRRSQEQIQKTTDQFIKEIDKLLEQ 177 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |