CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ARTAT (Ribosome-recycling factor OS=Arthrobacter aurescens (strain TC1) GN=frr PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32
Identity = 64/146 (43.84%), Postives = 100/146 (68.49%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +NPA+ +K+ VEYYG+P  L+ +A    PD+ ++LI PYDK++L+ IEKA+  S++G  P+NDG VIR+T+P+LT ERRKE  K+V  + E+ KV++R+IRR A  + +KL K+ +  ED       +L  LT +++  ID + K+
Sbjct:   32 ANPALYNKVIVEYYGTPTPLQQLASFGVPDARTILITPYDKTALRDIEKALSDSEVGANPSNDGNVIRVTIPELTKERRKEYVKIVKGKGEDAKVSIRSIRRKAKDSLDKLVKDGEAGEDEGARAEKELDALTKQHVDSIDELLKR 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THENN (Ribosome-recycling factor OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=frr PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32
Identity = 64/144 (44.44%), Postives = 105/144 (72.92%), Query Frame = -2
Query:  216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647
            +PA+L++I+V+YYG P  +  +A I+  +  +L+I+P+D+S L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EEGK+A+RNIRR+ +K  ++ QKE  + ED+ + L +++QKLTDE+++K+D +++
Sbjct:   33 SPAILEEIKVDYYGVPTPVNQLATISVSEERTLVIKPWDRSVLSLIEKAINASDLGLNPVNDGNVIRLVFPTPTTEQREKWVKKAKEIVEEGKIAIRNIRREIMKKIKEDQKEGNIPEDDARRLENEVQKLTDEFIEKLDEVFE 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICRS (Ribosome-recycling factor OS=Rickettsia rickettsii (strain Sheila Smith) GN=frr PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32
Identity = 64/142 (45.07%), Postives = 99/142 (69.72%), Query Frame = -2
Query:  213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638
            +LD + VE YGS + L  +A ++TPD+ ++ +Q +DKS + S+EK I  ++LG+TP  DG++IRL +P LT ERR EL K+  K  E+ K+++RNIRRD  +  +KL+K+  +++D    LS  +QKLTD+Y  K+DS+ KQ
Sbjct:   37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKISLRNIRRDGNEVLKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICRO (Ribosome-recycling factor OS=Rickettsia rickettsii (strain Iowa) GN=frr PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32
Identity = 64/142 (45.07%), Postives = 99/142 (69.72%), Query Frame = -2
Query:  213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638
            +LD + VE YGS + L  +A ++TPD+ ++ +Q +DKS + S+EK I  ++LG+TP  DG++IRL +P LT ERR EL K+  K  E+ K+++RNIRRD  +  +KL+K+  +++D    LS  +QKLTD+Y  K+DS+ KQ
Sbjct:   37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTELVKLAHKYGEDTKISLRNIRRDGNEVLKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICFE (Ribosome-recycling factor OS=Rickettsia felis GN=frr PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32
Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = -2
Query:  213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638
            +LD + VE YGS + L  +A ++TPD+ ++ +Q +DKS + S+EK I  ++LG+TP  DG++IRL +P LT ERRKEL K+  K  E+ K+++RNIRRD  +  +KL+K+  +++D    LS  +QKLTD+Y  K+DS  KQ
Sbjct:   37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKISLRNIRRDGNEELKKLEKDNIIAKDEHHSLSEQVQKLTDDYSSKVDSAIKQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_KOCRD (Ribosome-recycling factor OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=frr PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32
Identity = 66/145 (45.52%), Postives = 98/145 (67.59%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NPA+   + V YYG+P  L+ +A   TP++ +LLI PYD+S+L  IEKA+  SD+G  P NDG VIR+ +P+LT ERRKE  K+V  +AE+ +V+VRN+RR A +A EKL K+  + ED+ K    DL   T +++ ++D + K
Sbjct:   32 ANPALFSSLLVAYYGTPTPLQQLASFQTPEARTLLITPYDRSALNDIEKALRDSDIGANPANDGNVIRVVMPELTEERRKEYVKIVHGKAEDARVSVRNVRRHAKEAIEKLVKDGDVGEDDGKRGEKDLDAATKKHIDQVDELLK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_XYLFA (Ribosome-recycling factor OS=Xylella fastidiosa GN=frr PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 67/145 (46.21%), Postives = 101/145 (69.66%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++P++LD I+++ YG+   L  +A I+  +  SL+I  +DK+  K +EKAI +SDLG+TP   G +IRL LP LT ERRKEL+KVV  + E+ KVA+RNIRRDA +  + + K K+++ED V+    D+QKLTD+ +K +D + K
Sbjct:   32 ASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRQGEEDIQKLTDKAIKSVDEVVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THEM4 (Ribosome-recycling factor OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=frr PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 62/145 (42.76%), Postives = 104/145 (71.72%), Query Frame = -2
Query:  213 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 647
            +PA+L++I+V+YYG P  +  +A +N  +  SL+I+P++K+ L ++EKAI +SDLG+ P NDG VIRL  P  T+E+R++  K      E GK+AVRNIRR+ LK  + L+K  ++SED+ + L  ++Q LTD+Y++++D ++++
Sbjct:   33 SPALLEEIKVDYYGVPTPINQVATVNVTEERSLIIKPWEKNLLNAVEKAIQASDLGLNPMNDGNVIRLVFPTPTTEQRQKWVKKAKDIVEHGKIAVRNIRREILKELKDLKKNGEISEDDERRLEKEIQNLTDKYVEELDKLFER 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_METFK (Ribosome-recycling factor OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=frr PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++VEYYGS V++  +A ++  D+ +L +Q Y+K+    +EKAI  +DLG+ P  +G++IR+ +P LT ERR++L KVV  +AE  KVA+RN+RRDA  A +KL K+K++SED+ +    ++QKLTD+++ +ID +
Sbjct:   32 AHTGLLDHVQVEYYGSMVAINQVASVSLGDARTLNVQAYEKNMTPKVEKAIRDADLGLNPATNGDIIRVPMPMLTEERRRDLVKVVRSEAENAKVAIRNVRRDANDALKKLVKDKEISEDDERRAQDEVQKLTDKFVAEIDKL 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_METCA (Ribosome-recycling factor OS=Methylococcus capsulatus GN=frr PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 65/146 (44.52%), Postives = 103/146 (70.55%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            ++P++L+ I V YYG+ V L  +A +   D+ SL + P++++ +++IEKAI++SDLG+ P+  G VIR+ LP LT ERR++L KVV ++AE G+VA+RNIRRDA    +   KEK +SED  +     +QK TD+++K+ID + +Q
Sbjct:   32 AHPSLLEHIRVSYYGNEVPLTQVANVAVEDARSLAVTPWERNMVQAIEKAIMTSDLGLNPSTAGTVIRVPLPPLTEERRRDLIKVVRQEAENGRVAIRNIRRDANNELKAALKEKLISEDEDRRSQEQIQKTTDQFIKEIDKLLEQ 177          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_ARTAT3.391e-3243.84Ribosome-recycling factor OS=Arthrobacter aurescen... [more]
RRF_THENN4.429e-3244.44Ribosome-recycling factor OS=Thermotoga neapolitan... [more]
RRF_RICRS4.429e-3245.07Ribosome-recycling factor OS=Rickettsia rickettsii... [more]
RRF_RICRO4.429e-3245.07Ribosome-recycling factor OS=Rickettsia rickettsii... [more]
RRF_RICFE4.429e-3245.77Ribosome-recycling factor OS=Rickettsia felis GN=f... [more]
RRF_KOCRD4.429e-3245.52Ribosome-recycling factor OS=Kocuria rhizophila (s... [more]
RRF_XYLFA5.784e-3246.21Ribosome-recycling factor OS=Xylella fastidiosa GN... [more]
RRF_THEM45.784e-3242.76Ribosome-recycling factor OS=Thermosipho melanesie... [more]
RRF_METFK5.784e-3243.36Ribosome-recycling factor OS=Methylobacillus flage... [more]
RRF_METCA5.784e-3244.52Ribosome-recycling factor OS=Methylococcus capsula... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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