CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CUPTR (Ribosome-recycling factor OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=frr PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 66/141 (46.81%), Postives = 100/141 (70.92%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            ++  +LD ++V+YYGS V +  +A I   D+ ++ +QP++K  + ++EKAI   DLG+ P   GEVIR+ +P LT ERRKEL+KVV  +AE  KVAVRN+RRDA + ++KL K+K +SED  +    ++QKLTD+Y+ +ID
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVAAIGLADARTITVQPWEKKMVSAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVVKGEAEGAKVAVRNLRRDANEQFKKLVKDKTISEDEERRGQDEVQKLTDKYVAEID 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORDI (Ribosome-recycling factor OS=Corynebacterium diphtheriae GN=frr PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 59/143 (41.26%), Postives = 99/143 (69.23%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPAM + +  +YYG P  +  +A I+ P++  LLI+PY+ S +  IE AI +SDLG+ P NDG+V+R+T+PQLT ERR++++K+   + E+GK+A+RN+RR  +   +K+QK+    ED V+    +L K+T +Y+ ++D +
Sbjct:   32 ANPAMFNGVIADYYGVPTPITQMATISVPEARMLLIKPYEMSMMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMAKLAKSKGEDGKIAIRNVRRKGMDQLKKIQKDGDAGEDEVQAAEKELDKVTAKYVAQVDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ACHLI (Ribosome-recycling factor OS=Acholeplasma laidlawii (strain PG-8A) GN=frr PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +NP +LD+I V YYG    LK +A I+ P++  L I+P+DKS LK IE AI +S L + P NDG  IRLTLP LT ERR+ L K V K AE GKVA+R+IRRD  +  +KL     L+ED+ K    D+Q LTD Y+KK+D + K+
Sbjct:   35 ANPNILDRIMVSYYGVDTPLKQVASISVPEAQQLYIKPFDKSILKDIETAINTSSLELPPRNDGTGIRLTLPALTGERRRSLVKDVEKMAEAGKVAIRHIRRDGNEHLKKL----GLTEDDEKGYLEDVQALTDAYVKKVDELTKE 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_XYLFT (Ribosome-recycling factor OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=frr PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32
Identity = 67/145 (46.21%), Postives = 101/145 (69.66%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++P++LD I+++ YG+   L  +A I+  +  SL+I  +DK+  K +EKAI +SDLG+TP   G +IRL LP LT ERRKEL+KVV  + E+ KVA+RNIRRDA +  + + K K+++ED V+    D+QKLTD+ +K +D + K
Sbjct:   32 ASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDEVVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEWM (Ribosome-recycling factor OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=frr PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32
Identity = 67/143 (46.85%), Postives = 99/143 (69.23%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYGS   LK +  ++  DS +L I  +D + + ++EKAI+SSDLG+ P + G  IR+ LP LT ERRK+L KVV  +AE G++AVRN+RRDA    + L+KEK+ +ED+V     ++QK TD ++K ID I
Sbjct:   32 AHPSLLDSIKVPYYGSLTPLKQVGNVSIEDSRTLAISVFDSTMIPAVEKAIMSSDLGLNPMSAGATIRVPLPALTEERRKDLIKVVRAEAENGRIAVRNVRRDANSDVKALEKEKECTEDDVHRSEDEVQKFTDAHIKLIDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEFN (Ribosome-recycling factor OS=Shewanella frigidimarina (strain NCIMB 400) GN=frr PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32
Identity = 64/143 (44.76%), Postives = 99/143 (69.23%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V  YGS   LK +A +   DS +L +  +D+S ++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G++A+RN+RRDA+   +KL+K K  +ED+V+    ++QK TD  +K ID I
Sbjct:   32 AHPSLLDSIQVSCYGSMSPLKQVANVGVEDSRTLTVNVFDRSMVQAVEKAIMSSDLGLNPMSAGATLRIPLPSLTEERRKDFIKVVRNEAENGRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEDEVQKHTDSSIKNIDQI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICTY (Ribosome-recycling factor OS=Rickettsia typhi GN=frr PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32
Identity = 66/141 (46.81%), Postives = 96/141 (68.09%), Query Frame = -2
Query:  213 LDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 635
            LD + VE YGS V L  +A ++TPD+ ++ +Q +DKS + S+EK I  ++LG+T   DG++IRL +P LT ERRKE  K+  K  EE K+++RNIRRD ++  +KL+K+  + +D    LS  +QKLTDEY  K+DS  KQ
Sbjct:   38 LDSVTVEAYGSKVPLAQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTHATDGQLIRLPIPSLTEERRKEFVKLAHKYGEETKISLRNIRRDGIEELKKLEKDNIIVKDEYHSLSEQVQKLTDEYSSKVDSAIKQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICCN (Ribosome-recycling factor OS=Rickettsia conorii GN=frr PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32
Identity = 64/142 (45.07%), Postives = 99/142 (69.72%), Query Frame = -2
Query:  213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638
            +LD + VE YGS + L  +A ++TPD+ ++ +Q +DKS + S+EK I  ++LG+TP  DG++IRL +P LT ERR  L K+  K  E+ K+++RNIRRD  +A +KL+K+  +++D    LS  +QKLTD+Y  K+DS+ KQ
Sbjct:   37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTALVKLAHKYGEDTKISLRNIRRDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQ 178          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RALEH (Ribosome-recycling factor OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=frr PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32
Identity = 65/143 (45.45%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K  + ++EKAI   DLG+ P   GEVIR+ +P LT ERRKEL+KVV  +AE  KVAVRN+RRDA + ++KL K+K +SED+ +    ++QKLTD+Y+ +ID +
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVAAVGLADARTITVQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVVKGEAEGAKVAVRNLRRDANEQFKKLVKDKTISEDDERRGQDEVQKLTDKYVAEIDKM 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PELCD (Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=frr PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32
Identity = 63/146 (43.15%), Postives = 97/146 (66.44%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            ++ ++LD + V+YYG+P  L  +  +  P+   + IQP++K  L  IE+AI  +DLG+ P +DG +IRL +P +T ERRKE+ KVV K  E+ KV VR+ RRDA    +KL+K K++SED++K    ++Q +TD Y+ KID +  Q
Sbjct:   32 ASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQPWEKKLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAKVGVRSARRDANDGMKKLEKNKEISEDDLKRGEKEIQDVTDSYVAKIDDLVSQ 177          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CUPTR5.784e-3246.81Ribosome-recycling factor OS=Cupriavidus taiwanens... [more]
RRF_CORDI5.784e-3241.26Ribosome-recycling factor OS=Corynebacterium dipht... [more]
RRF_ACHLI5.784e-3250.68Ribosome-recycling factor OS=Acholeplasma laidlawi... [more]
RRF_XYLFT7.554e-3246.21Ribosome-recycling factor OS=Xylella fastidiosa (s... [more]
RRF_SHEWM7.554e-3246.85Ribosome-recycling factor OS=Shewanella woodyi (st... [more]
RRF_SHEFN7.554e-3244.76Ribosome-recycling factor OS=Shewanella frigidimar... [more]
RRF_RICTY7.554e-3246.81Ribosome-recycling factor OS=Rickettsia typhi GN=f... [more]
RRF_RICCN7.554e-3245.07Ribosome-recycling factor OS=Rickettsia conorii GN... [more]
RRF_RALEH7.554e-3245.45Ribosome-recycling factor OS=Ralstonia eutropha (s... [more]
RRF_PELCD7.554e-3243.15Ribosome-recycling factor OS=Pelobacter carbinolic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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