CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CUPTR (Ribosome-recycling factor OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=frr PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32 Identity = 66/141 (46.81%), Postives = 100/141 (70.92%), Query Frame = -2 Query: 228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650 ++ +LD ++V+YYGS V + +A I D+ ++ +QP++K + ++EKAI DLG+ P GEVIR+ +P LT ERRKEL+KVV +AE KVAVRN+RRDA + ++KL K+K +SED + ++QKLTD+Y+ +ID Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVAAIGLADARTITVQPWEKKMVSAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVVKGEAEGAKVAVRNLRRDANEQFKKLVKDKTISEDEERRGQDEVQKLTDKYVAEID 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORDI (Ribosome-recycling factor OS=Corynebacterium diphtheriae GN=frr PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32 Identity = 59/143 (41.26%), Postives = 99/143 (69.23%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NPAM + + +YYG P + +A I+ P++ LLI+PY+ S + IE AI +SDLG+ P NDG+V+R+T+PQLT ERR++++K+ + E+GK+A+RN+RR + +K+QK+ ED V+ +L K+T +Y+ ++D + Sbjct: 32 ANPAMFNGVIADYYGVPTPITQMATISVPEARMLLIKPYEMSMMNEIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRRDMAKLAKSKGEDGKIAIRNVRRKGMDQLKKIQKDGDAGEDEVQAAEKELDKVTAKYVAQVDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ACHLI (Ribosome-recycling factor OS=Acholeplasma laidlawii (strain PG-8A) GN=frr PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32 Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 +NP +LD+I V YYG LK +A I+ P++ L I+P+DKS LK IE AI +S L + P NDG IRLTLP LT ERR+ L K V K AE GKVA+R+IRRD + +KL L+ED+ K D+Q LTD Y+KK+D + K+ Sbjct: 35 ANPNILDRIMVSYYGVDTPLKQVASISVPEAQQLYIKPFDKSILKDIETAINTSSLELPPRNDGTGIRLTLPALTGERRRSLVKDVEKMAEAGKVAIRHIRRDGNEHLKKL----GLTEDDEKGYLEDVQALTDAYVKKVDELTKE 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_XYLFT (Ribosome-recycling factor OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=frr PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32 Identity = 67/145 (46.21%), Postives = 101/145 (69.66%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 ++P++LD I+++ YG+ L +A I+ + SL+I +DK+ K +EKAI +SDLG+TP G +IRL LP LT ERRKEL+KVV + E+ KVA+RNIRRDA + + + K K+++ED V+ D+QKLTD+ +K +D + K Sbjct: 32 ASPSLLDGIKIKAYGTDTPLNQVASISVSEGRSLVITVFDKNMSKDVEKAIYASDLGLTPTVVGTLIRLNLPPLTEERRKELTKVVHSEGEDTKVAIRNIRRDANQQIKDMLKSKEITEDEVRHGEEDIQKLTDKAIKSVDEVVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEWM (Ribosome-recycling factor OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=frr PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32 Identity = 67/143 (46.85%), Postives = 99/143 (69.23%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++LD I+V YYGS LK + ++ DS +L I +D + + ++EKAI+SSDLG+ P + G IR+ LP LT ERRK+L KVV +AE G++AVRN+RRDA + L+KEK+ +ED+V ++QK TD ++K ID I Sbjct: 32 AHPSLLDSIKVPYYGSLTPLKQVGNVSIEDSRTLAISVFDSTMIPAVEKAIMSSDLGLNPMSAGATIRVPLPALTEERRKDLIKVVRAEAENGRIAVRNVRRDANSDVKALEKEKECTEDDVHRSEDEVQKFTDAHIKLIDEI 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEFN (Ribosome-recycling factor OS=Shewanella frigidimarina (strain NCIMB 400) GN=frr PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32 Identity = 64/143 (44.76%), Postives = 99/143 (69.23%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++LD I+V YGS LK +A + DS +L + +D+S ++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV +AE G++A+RN+RRDA+ +KL+K K +ED+V+ ++QK TD +K ID I Sbjct: 32 AHPSLLDSIQVSCYGSMSPLKQVANVGVEDSRTLTVNVFDRSMVQAVEKAIMSSDLGLNPMSAGATLRIPLPSLTEERRKDFIKVVRNEAENGRIAIRNVRRDAISEVKKLEKAKACTEDDVRRSEDEVQKHTDSSIKNIDQI 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICTY (Ribosome-recycling factor OS=Rickettsia typhi GN=frr PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32 Identity = 66/141 (46.81%), Postives = 96/141 (68.09%), Query Frame = -2 Query: 213 LDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 635 LD + VE YGS V L +A ++TPD+ ++ +Q +DKS + S+EK I ++LG+T DG++IRL +P LT ERRKE K+ K EE K+++RNIRRD ++ +KL+K+ + +D LS +QKLTDEY K+DS KQ Sbjct: 38 LDSVTVEAYGSKVPLAQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTHATDGQLIRLPIPSLTEERRKEFVKLAHKYGEETKISLRNIRRDGIEELKKLEKDNIIVKDEYHSLSEQVQKLTDEYSSKVDSAIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICCN (Ribosome-recycling factor OS=Rickettsia conorii GN=frr PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32 Identity = 64/142 (45.07%), Postives = 99/142 (69.72%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD + VE YGS + L +A ++TPD+ ++ +Q +DKS + S+EK I ++LG+TP DG++IRL +P LT ERR L K+ K E+ K+++RNIRRD +A +KL+K+ +++D LS +QKLTD+Y K+DS+ KQ Sbjct: 37 LLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTALVKLAHKYGEDTKISLRNIRRDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RALEH (Ribosome-recycling factor OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=frr PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32 Identity = 65/143 (45.45%), Postives = 102/143 (71.33%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++V+YYGS V + +A + D+ ++ +QP++K + ++EKAI DLG+ P GEVIR+ +P LT ERRKEL+KVV +AE KVAVRN+RRDA + ++KL K+K +SED+ + ++QKLTD+Y+ +ID + Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVAAVGLADARTITVQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVVKGEAEGAKVAVRNLRRDANEQFKKLVKDKTISEDDERRGQDEVQKLTDKYVAEIDKM 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PELCD (Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=frr PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32 Identity = 63/146 (43.15%), Postives = 97/146 (66.44%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 ++ ++LD + V+YYG+P L + + P+ + IQP++K L IE+AI +DLG+ P +DG +IRL +P +T ERRKE+ KVV K E+ KV VR+ RRDA +KL+K K++SED++K ++Q +TD Y+ KID + Q Sbjct: 32 ASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQPWEKKLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAKVGVRSARRDANDGMKKLEKNKEISEDDLKRGEKEIQDVTDSYVAKIDDLVSQ 177 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |