CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LACRJ (Ribosome-recycling factor OS=Lactobacillus reuteri (strain JCM 1112) GN=frr PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +N ++L+ ++VEYYG+P L +A I P++ LLI PYD+S L+ IEKAI +S+LG+TP NDG IRL +PQLT +RRKEL K V + E+ KVAVRN+RR+A+ +K K ++D DL +Q TD +K ++ I Sbjct: 34 ANASLLNSVKVEYYGAPTPLNQVASITIPEARQLLITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAKVAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDI 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LACRD (Ribosome-recycling factor OS=Lactobacillus reuteri (strain DSM 20016) GN=frr PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +N ++L+ ++VEYYG+P L +A I P++ LLI PYD+S L+ IEKAI +S+LG+TP NDG IRL +PQLT +RRKEL K V + E+ KVAVRN+RR+A+ +K K ++D DL +Q TD +K ++ I Sbjct: 34 ANASLLNSVKVEYYGAPTPLNQVASITIPEARQLLITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAKVAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDI 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HAEIN (Ribosome-recycling factor OS=Haemophilus influenzae GN=frr PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 62/143 (43.36%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 + P++LD I+VEYYG+ L+ +A + D+ +L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E+GKVAVRN+RRDA + L K+K++SE+ ++QK+TD Y+KK+D + Sbjct: 32 AQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HAEIG (Ribosome-recycling factor OS=Haemophilus influenzae (strain PittGG) GN=frr PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 62/143 (43.36%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 + P++LD I+VEYYG+ L+ +A + D+ +L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V + E+GKVAVRN+RRDA + L K+K++SE+ ++QK+TD Y+KK+D + Sbjct: 32 AQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURS3 (Ribosome-recycling factor OS=Burkholderia sp. (strain 383) GN=frr PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 63/143 (44.06%), Postives = 102/143 (71.33%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ MLD ++V+YYGS V + +A + D+ ++ +QP++K + +EKAI +DLG+ P G+ IR+ +P LT ERR+EL+KVV + E KVA+RN+RRDA +A +KL K+K++SED+ + S D+QKLTD+++ +ID + Sbjct: 33 AHTGMLDHVQVDYYGSMVPISQVANMTLVDARTIGVQPWEKPMVAKVEKAIREADLGLNPATSGDQIRVPMPALTEERRRELTKVVKSEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURCM (Ribosome-recycling factor OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=frr PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 61/143 (42.66%), Postives = 104/143 (72.73%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + E KVA+RN+RRDA +A +KL K+K++SED+ + S D+QKLTD+++ ++D + Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURCJ (Ribosome-recycling factor OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=frr PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 61/143 (42.66%), Postives = 104/143 (72.73%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + E KVA+RN+RRDA +A +KL K+K++SED+ + S D+QKLTD+++ ++D + Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURA4 (Ribosome-recycling factor OS=Burkholderia ambifaria (strain MC40-6) GN=frr PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 61/143 (42.66%), Postives = 104/143 (72.73%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + E KVA+RN+RRDA +A +KL K+K++SED+ + S D+QKLTD+++ ++D + Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BIFLO (Ribosome-recycling factor OS=Bifidobacterium longum GN=frr PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 65/143 (45.45%), Postives = 98/143 (68.53%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NPA+L+ I V+YYG+P +K++A I P+ +L + P+D S ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE K+ +AE+GKVAVRNIRR + +K K+ ++ ED L DL K+T +ID++ Sbjct: 30 ANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGKVAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTL 172
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BIFLD (Ribosome-recycling factor OS=Bifidobacterium longum (strain DJO10A) GN=frr PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31 Identity = 65/143 (45.45%), Postives = 98/143 (68.53%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NPA+L+ I V+YYG+P +K++A I P+ +L + P+D S ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE K+ +AE+GKVAVRNIRR + +K K+ ++ ED L DL K+T +ID++ Sbjct: 30 ANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGKVAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTL 172 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |