CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LACRJ (Ribosome-recycling factor OS=Lactobacillus reuteri (strain JCM 1112) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++L+ ++VEYYG+P  L  +A I  P++  LLI PYD+S L+ IEKAI +S+LG+TP NDG  IRL +PQLT +RRKEL K V  + E+ KVAVRN+RR+A+   +K  K    ++D   DL   +Q  TD  +K ++ I
Sbjct:   34 ANASLLNSVKVEYYGAPTPLNQVASITIPEARQLLITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAKVAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDI 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LACRD (Ribosome-recycling factor OS=Lactobacillus reuteri (strain DSM 20016) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +N ++L+ ++VEYYG+P  L  +A I  P++  LLI PYD+S L+ IEKAI +S+LG+TP NDG  IRL +PQLT +RRKEL K V  + E+ KVAVRN+RR+A+   +K  K    ++D   DL   +Q  TD  +K ++ I
Sbjct:   34 ANASLLNSVKVEYYGAPTPLNQVASITIPEARQLLITPYDESVLEEIEKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAKVAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEKKVQNETDAGIKNLEDI 176
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HAEIN (Ribosome-recycling factor OS=Haemophilus influenzae GN=frr PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 62/143 (43.36%), Postives = 101/143 (70.63%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + P++LD I+VEYYG+   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GKVAVRN+RRDA    + L K+K++SE+       ++QK+TD Y+KK+D +
Sbjct:   32 AQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 174
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HAEIG (Ribosome-recycling factor OS=Haemophilus influenzae (strain PittGG) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 62/143 (43.36%), Postives = 101/143 (70.63%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + P++LD I+VEYYG+   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GKVAVRN+RRDA    + L K+K++SE+       ++QK+TD Y+KK+D +
Sbjct:   32 AQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKVAVRNVRRDANDKIKALLKDKEISENEQHKAEEEIQKITDIYIKKVDEV 174
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURS3 (Ribosome-recycling factor OS=Burkholderia sp. (strain 383) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 63/143 (44.06%), Postives = 102/143 (71.33%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  MLD ++V+YYGS V +  +A +   D+ ++ +QP++K  +  +EKAI  +DLG+ P   G+ IR+ +P LT ERR+EL+KVV  + E  KVA+RN+RRDA +A +KL K+K++SED+ +  S D+QKLTD+++ +ID +
Sbjct:   33 AHTGMLDHVQVDYYGSMVPISQVANMTLVDARTIGVQPWEKPMVAKVEKAIREADLGLNPATSGDQIRVPMPALTEERRRELTKVVKSEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKL 175
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURCM (Ribosome-recycling factor OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 61/143 (42.66%), Postives = 104/143 (72.73%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  + E  KVA+RN+RRDA +A +KL K+K++SED+ +  S D+QKLTD+++ ++D +
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKL 175
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURCJ (Ribosome-recycling factor OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 61/143 (42.66%), Postives = 104/143 (72.73%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  + E  KVA+RN+RRDA +A +KL K+K++SED+ +  S D+QKLTD+++ ++D +
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKL 175
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURA4 (Ribosome-recycling factor OS=Burkholderia ambifaria (strain MC40-6) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 61/143 (42.66%), Postives = 104/143 (72.73%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  + E  KVA+RN+RRDA +A +KL K+K++SED+ +  S D+QKLTD+++ ++D +
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPALTEERRRELTKVVKSEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRASDDVQKLTDKHVAEVDKL 175
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BIFLO (Ribosome-recycling factor OS=Bifidobacterium longum GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 65/143 (45.45%), Postives = 98/143 (68.53%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPA+L+ I V+YYG+P  +K++A I  P+  +L + P+D S   ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE  K+   +AE+GKVAVRNIRR   +  +K  K+ ++ ED    L  DL K+T     +ID++
Sbjct:   30 ANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGKVAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTL 172
[Close]
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BIFLD (Ribosome-recycling factor OS=Bifidobacterium longum (strain DJO10A) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 65/143 (45.45%), Postives = 98/143 (68.53%), Query Frame = -2 
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPA+L+ I V+YYG+P  +K++A I  P+  +L + P+D S   ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE  K+   +AE+GKVAVRNIRR   +  +K  K+ ++ ED    L  DL K+T     +ID++
Sbjct:   30 ANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAEDGKVAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTL 172
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_LACRJ1.289e-3146.85Ribosome-recycling factor OS=Lactobacillus reuteri... [more]
RRF_LACRD1.289e-3146.85Ribosome-recycling factor OS=Lactobacillus reuteri... [more]
RRF_HAEIN1.289e-3143.36Ribosome-recycling factor OS=Haemophilus influenza... [more]
RRF_HAEIG1.289e-3143.36Ribosome-recycling factor OS=Haemophilus influenza... [more]
RRF_BURS31.289e-3144.06Ribosome-recycling factor OS=Burkholderia sp. (str... [more]
RRF_BURCM1.289e-3142.66Ribosome-recycling factor OS=Burkholderia ambifari... [more]
RRF_BURCJ1.289e-3142.66Ribosome-recycling factor OS=Burkholderia cepacia ... [more]
RRF_BURA41.289e-3142.66Ribosome-recycling factor OS=Burkholderia ambifari... [more]
RRF_BIFLO1.289e-3145.45Ribosome-recycling factor OS=Bifidobacterium longu... [more]
RRF_BIFLD1.289e-3145.45Ribosome-recycling factor OS=Bifidobacterium longu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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