CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOB1 (Ribosome-recycling factor OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=frr PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.972e-37
Identity = 76/143 (53.15%), Postives = 103/143 (72.03%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLD+IE EYYGS   L  +  I+ P++  LLIQP+DK +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   32 ANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACWK (Ribosome-recycling factor OS=Bacillus weihenstephanensis (strain KBAB4) GN=frr PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.972e-37
Identity = 72/141 (51.06%), Postives = 105/141 (74.47%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD+    +KL+K   ++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   36 VLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDSNDDLKKLEKAGDITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACLA (Ribosome-recycling factor OS=Lactococcus lactis subsp. lactis GN=frr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 71/143 (49.65%), Postives = 105/143 (73.43%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+++V YYG+P  L  +A I  P++  L++ P+DKS LK IEKA+  SDLG+TP NDG VIRL +P LT ERR+EL K + K  E  KVA+RNIRRDA+   +K +K K+++ED++KDL +++QK+TD+ +K+ D +
Sbjct:   32 ANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTPFDKSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIRNIRRDAMDTAKKSEKAKEITEDDLKDLENNIQKVTDDAVKEADRL 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACH4 (Ribosome-recycling factor OS=Lactobacillus helveticus (strain DPC 4571) GN=frr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 71/143 (49.65%), Postives = 106/143 (74.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD ++VEYYG+P  L  ++ I  P+   LLI PYD++SL  IE A+++S+LG+TP NDG+VIRL +PQLT ERR+E++K V K AE+ K+AVRN+RR+A+ A +K QK+  ++ED  ++L   +QK+TD+  KKID +
Sbjct:   32 ANAALLDNVQVEYYGAPTPLTQMSSITIPEPRVLLITPYDQNSLDDIEHALLASNLGLTPANDGKVIRLVIPQLTGERREEIAKEVGKYAEDAKIAVRNVRREAMDALKKEQKDGNITEDEQRNLEKQVQKITDDSTKKIDQL 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CARHZ (Ribosome-recycling factor OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=frr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 74/145 (51.03%), Postives = 106/145 (73.10%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            + P +L+K+ VEYYG+ + +  +A I+ P+   L+IQP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV  K+AEE +VA+RNIRRDA    + L+K+K +SED  K    ++QKLTD+++K +D + K
Sbjct:   32 ATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVIQPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVAIRNIRRDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRSY (Ribosome-recycling factor OS=Streptococcus suis (strain 05ZYH33) GN=frr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+I VEYYGSP  L  +A I  P++  LLI P+DKS LK IE+A+ +SDLG+TP +DG VIRL +P LT E RK L+K V K  E  KVA+RNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRS2 (Ribosome-recycling factor OS=Streptococcus suis (strain 98HAH33) GN=frr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+I VEYYGSP  L  +A I  P++  LLI P+DKS LK IE+A+ +SDLG+TP +DG VIRL +P LT E RK L+K V K  E  KVA+RNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K ID +
Sbjct:   32 ANASLLDRISVEYYGSPTPLNQLAGITVPEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVIPALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDIQKVTDDAIKTIDKM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACLS (Ribosome-recycling factor OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=frr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 70/143 (48.95%), Postives = 105/143 (73.43%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+++V YYG+P  L  +A I  P++  L++ P+DKS LK IEK++  SDLG+TP NDG VIRL +P LT ERR+EL K + K  E  KVA+RNIRRDA+   +K +K K+++ED++KDL +++QK+TD+ +K+ D +
Sbjct:   32 ANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTPFDKSILKDIEKSLYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIRNIRRDAMDTAKKSEKAKEITEDDLKDLENEIQKVTDDAVKEADRL 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DESRM (Ribosome-recycling factor OS=Desulfotomaculum reducens (strain MI-1) GN=frr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 76/145 (52.41%), Postives = 106/145 (73.10%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            + P +LDK+ V YYG+P  L  +A I+ P++  L+IQP+DKS +  +EKAI+ SD+G+TP++DG VIRL +PQLT ERR EL KV+ K+AEEG+VAVRNIRRD   + +  QK+  + ED  K    +LQKLTD+Y+K+ID + K
Sbjct:   32 ATPSILDKVTVSYYGTPTPLNQLANISVPEARVLVIQPWDKSVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKKAEEGRVAVRNIRRDTNDSIKAKQKD-GIPEDEAKRGQDELQKLTDKYVKEIDEMVK 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLONN (Ribosome-recycling factor OS=Clostridium novyi (strain NT) GN=frr PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 71/143 (49.65%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLD++ VEYYGS   +  +A +++P+   LLIQP+DK+SLK IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK++ K V K  EE K+A+R+IRR+     + L+K   ++ED  K+  S +QK+TD+Y+ +ID+I
Sbjct:   32 ANPAMLDRVNVEYYGSETPINQLANVSSPEPRVLLIQPWDKNSLKDIEKAILQSDLGLNPSNDGSVIRLIIPELTEETRKDIVKKVKKIGEESKIAIRSIRREGNDKIKNLKKNNDITEDEAKEGESSVQKITDKYITEIDNI 174          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CLOB15.972e-3753.15Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_BACWK5.972e-3751.06Ribosome-recycling factor OS=Bacillus weihenstepha... [more]
RRF_LACLA7.799e-3749.65Ribosome-recycling factor OS=Lactococcus lactis su... [more]
RRF_LACH47.799e-3749.65Ribosome-recycling factor OS=Lactobacillus helveti... [more]
RRF_CARHZ7.799e-3751.03Ribosome-recycling factor OS=Carboxydothermus hydr... [more]
RRF_STRSY1.330e-3652.45Ribosome-recycling factor OS=Streptococcus suis (s... [more]
RRF_STRS21.330e-3652.45Ribosome-recycling factor OS=Streptococcus suis (s... [more]
RRF_LACLS1.330e-3648.95Ribosome-recycling factor OS=Lactococcus lactis su... [more]
RRF_DESRM1.330e-3652.41Ribosome-recycling factor OS=Desulfotomaculum redu... [more]
RRF_CLONN1.330e-3649.65Ribosome-recycling factor OS=Clostridium novyi (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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